Evidence map›Paper›PMID 16963493›Full record

ArticleNucleic acids research2006

A scalable method for multiplex LED-controlled synthesis of DNA in capillaries.

Sarah Blair, Kathryn Richmond, Matthew Rodesch, Michael Bassetti, Franco Cerrina

Erratum issuedAbstract readEvaluation Study
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors.

Sarah BlairMaterials Science Program, University of Wisconsin, Madison, WI 53706, USA.
Kathryn Richmond
Matthew Rodesch
Michael Bassetti
Franco Cerrina

Funding

Light-directed synthesis of genes &other biomoleculesR01HG003275 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI CERRINA, FRANCESCO · 2004 to 2007
$4.5M
NHGRI NIH HHS 3 R01 HG003275-02SNHGRI NIH HHS R01 HG003275
6 · The paper itself

Abstract

As research in synthetic biology and genomic sciences becomes more widespread, the need for diverse oligonucleotide populations has increased. To limit reagent cost, it would be advantageous to obtain high quality populations in minute amounts. Towards that end, synthesis of DNA strands in capillaries utilizing photolabile 3-nitrophenylpropyloxycarbonyl (NPPOC) chemistry and ultraviolet-light emitting diodes (UV-LEDs) was examined. Multiple oligonucleotides were made in single capillaries and were characterized by hybridization, sequencing and gene synthesis. DNA synthesized in capillaries was capable of being hybridized and signal intensities correlated with microarray data. Sequencing demonstrated that the oligonucleotides were of high quality (up to 44% perfect sequences). Oligonucleotides were combined and used successfully for gene synthesis. This system offers a novel, scalable method to synthesize high quality oligonucleotides for biological applications.

Indexed as

Genes, SyntheticUltraviolet RaysCarboxylic AcidsDNAGlassNitrobenzenesNucleic Acid HybridizationOligodeoxyribonucleotidesSequence Analysis, DNASilicates2-nitrophenylpropyloxycarbonyl chlorideCarboxylic AcidsDNANitrobenzenesOligodeoxyribonucleotidesSilicates

Identifiers

PMID16963493
PMCPMC1636377

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.