Evidence map›Paper›PMID 16963276›Full record

ArticleJournal of the American Society for Mass Spectrometry2006

Charge location directs electron capture dissociation of peptide dications.

Yury O Tsybin, Kim F Haselmann, Mark R Emmett, Christopher L Hendrickson, Alan G Marshall

Open access · greenAbstract readEvaluation Study
PubMed Publisher
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Protein Structural Analysis via Mass Spectrometry-Based Proteomics.Advances in experimental medicine and biology · 2016
    Review
  4. Article
  5. Article
  6. Electron capture dissociation of hydrogen-deficient peptide radical cations.Journal of the American Society for Mass Spectrometry · 2012
    Article
  7. ECD-like peptide fragmentation at atmospheric pressure.International journal of mass spectrometry · 2012
    Article
  8. Article
  9. Electron induced dissociation of singly deprotonated peptides.Journal of the American Society for Mass Spectrometry · 2011
    Article
  10. Unusual fragmentation of β-linked peptides by ExD tandem mass spectrometry.Journal of the American Society for Mass Spectrometry · 2011
    Article
  11. Article
  12. Article
  13. Article
  14. Electron-capture-induced dissociation of protoporphyrin IX ions.Journal of the American Society for Mass Spectrometry · 2008
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yury O TsybinIon Cyclotron Resonance Program, National High Magnetic Field Laboratory Florida State University, Tallahassee, Florida 32310-4005, USA.
Kim F Haselmann
Mark R Emmett
Christopher L Hendrickson
Alan G Marshall
Florida State University · USNational High Magnetic Field Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The effect of peptide dication charge location on electron capture dissociation (ECD) fragmentation pattern is investigated. ECD fragmentation patterns are compared for peptides with amide and free acid C-terminal groups. ECD of free acid compared with C-terminally amidated peptides with basic residues near the N-terminus demonstrates increased formation of a-type ions. Similarly, ECD of free acid compared with C-terminally amidated peptides with basic residues near the C-terminus exhibits increased formation of y-type ions. Alteration of the peptide sequence to inhibit the formation of charged side chains (i.e., amino acid substitution and acetylation) provides further evidence for charge location effect on ECD. We propose that formation of zwitterionic peptide structures increases the likelihood of amide nitrogen protonation (versus basic side chains), which is responsible for the increase in a- and y-type ion formation.

Indexed as

AlgorithmsModels, ChemicalModels, MolecularSoftwareCationsDeuterium Exchange MeasurementElectronsMass SpectrometryPeptidesReproducibility of ResultsSensitivity and SpecificityStatic ElectricityCationsPeptides

Identifiers

PMID16963276
OpenAlexW1999969386

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.