Evidence map›Paper›PMID 16962134›Full record

ArticleJournal of molecular biology2006

Sites of interaction of a precursor polypeptide on the export chaperone SecB mapped by site-directed spin labeling.

Jennine M Crane, Yuying Suo, Angela A Lilly, Chunfeng Mao, Wayne L Hubbell, Linda L Randall

Abstract readComparative Study
In one paragraph

Article in Journal of molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. The Dynamic SecYEG Translocon.Frontiers in molecular biosciences · 2021
    Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Directed evolution of SecB chaperones toward toxin-antitoxin systems.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  9. Review
  10. Article
  11. Article
  12. The basis of asymmetry in the SecA:SecB complex.Journal of molecular biology · 2015
    Article
  13. Multitasking SecB chaperones in bacteria.Frontiers in microbiology · 2014
    Review
  14. Article
  15. Article
  16. SecB-like chaperone controls a toxin-antitoxin stress-responsive system in Mycobacterium tuberculosis.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  17. Integrating protein homeostasis strategies in prokaryotes.Cold Spring Harbor perspectives in biology · 2011
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jennine M CraneDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA. craneje@missouri.edu
Yuying Suo
Angela A Lilly
Chunfeng Mao
Wayne L Hubbell
Linda L Randall

Funding

MOLECULAR BASIS OF MEMBRANE EXCITATIONR01EY005216 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HUBBELL, WAYNE L · 1985 to 2019
$9.8M
The Export of Proteins in Escherichia Coli; Administrative Supplement for EquipmentR01GM029798 · NIGMS · WASHINGTON STATE UNIVERSITY · PI RANDALL, LINDA L. · 1985 to 2019
$7.7M
EXPORT OF PROTEINS IN ESCHERICHIA COLIR37GM029798 · NIGMS · WASHINGTON STATE UNIVERSITY · PI RANDALL, LINDA L. · 1993 to 2002
$1.1M
MOLECULAR BASIS OF MEMBRANE EXCITATIONR37EY005216 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HUBBELL, WAYNE L · 1990 to 1999
–
NEI NIH HHS EY05216NEI NIH HHS R01 EY005216NEI NIH HHS R37 EY005216NIGMS NIH HHS GM29798NIGMS NIH HHS R01 GM029798NIGMS NIH HHS R37 GM029798
6 · The paper itself

Abstract

Export of protein into the periplasm of Escherichia coli via the general secretory system requires that the transported polypeptides be devoid of stably folded tertiary structure. Capture of the precursor polypeptides before they fold is achieved by the promiscuous binding to the chaperone SecB. SecB delivers its ligand to export sites through its specific binding to SecA, a peripheral component of the membrane translocon. At the translocon the ligand is passed from SecB to SecA and subsequently through the SecYEG channel. We have previously used site-directed spin labeling and electron paramagnetic resonance spectroscopy to establish a docking model between SecB and SecA. Here we report use of the same strategy to map the pathway of a physiologic ligand, the unfolded form of precursor galactose-binding protein, on SecB. Our set of SecB variants each containing a single cysteine, which was used in the previous study, has been expanded to 48 residues, which cover 49% of the surface of SecB. The residues on SecB involved in contacts were identified as those that, upon addition of the unfolded polypeptide ligand, showed changes in spectral line shape consistent with restricted motion of the nitroxide. We conclude that the bound precursor makes contact with a large portion of the surface of the small chaperone. The sites on SecB that interact with the ligand are compared with the previously identified sites that interact with SecA and a model for transfer of the ligand is discussed.

Indexed as

Protein Interaction MappingSpin LabelsBacterial ProteinsBinding SitesCalcium-Binding ProteinsEscherichia coli ProteinsHaemophilus influenzaeLigandsMonosaccharide Transport ProteinsMutagenesis, Site-DirectedPeriplasmic Binding ProteinsProtein FoldingProtein PrecursorsSurface PropertiesBacterial ProteinsCalcium-Binding ProteinsEscherichia coli Proteinsgalactose-binding proteinLigandsMonosaccharide Transport ProteinsPeriplasmic Binding ProteinsProtein PrecursorsSecB protein, BacteriaSpin Labels

Identifiers

PMID16962134
PMCPMC2925277

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.