Evidence map›Paper›PMID 16961460›Full record

ArticleThe Biochemical journal2007

A new assay for nitric oxide reductase reveals two conserved glutamate residues form the entrance to a proton-conducting channel in the bacterial enzyme.

Faye H Thorndycroft, Gareth Butland, David J Richardson, Nicholas J Watmough

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Insertion of the FeFEBS letters · 2025
    Article
  3. Article
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  5. Review
  6. Article
  7. Article
  8. Article
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  11. Review
  12. Article
  13. Article
  14. Characterization of the nitric oxide reductase from Thermus thermophilus.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  15. Article
  16. Structural basis for nitrous oxide generation by bacterial nitric oxide reductases.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012
    Article
  17. Review
  18. Article
  19. Article
  20. Bacterial oxygen production in the dark.Frontiers in microbiology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Faye H ThorndycroftCentre for Metalloprotein Spectroscopy and Biology, School of Biological Sciences, University of East Anglia, Norfolk NR4 7TJ, UK.
Gareth Butland
David J Richardson
Nicholas J Watmough
University of East Anglia · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C007719/1
6 · The paper itself

Abstract

A specific amperometric assay was developed for the membrane-bound NOR [NO (nitric oxide) reductase] from the model denitrifying bacterium Paracoccus denitrificans using its natural electron donor, pseudoazurin, as a co-substrate. The method allows the rapid and specific assay of NO reduction catalysed by recombinant NOR expressed in the cytoplasmic membranes of Escherichia coli. The effect on enzyme activity of substituting alanine, aspartate or glutamine for two highly conserved glutamate residues, which lie in a periplasmic facing loop between transmembrane helices III and IV in the catalytic subunit of NOR, was determined using this method. Three of the substitutions (E122A, E125A and E125D) lead to an almost complete loss of NOR activity. Some activity is retained when either Glu122 or Glu125 is substituted with a glutamine residue, but only replacement of Glu122 with an aspartate residue retains a high level of activity. These results are interpreted in terms of these residues forming the mouth of a channel that conducts substrate protons to the active site of NOR during turnover. This channel is also likely to be that responsible in the coupling of proton movement to electron transfer during the oxidation of fully reduced NOR with oxygen [U. Flock, N. J. Watmough and P. Adelroth (2005) Biochemistry 44, 10711-10719].

Indexed as

Amino Acid SubstitutionBacterial ProteinsBase SequenceCell MembraneConserved SequenceDNA PrimersEscherichia coliEscherichia coli ProteinsGlutamic AcidKineticsMutagenesis, Site-DirectedNitric OxideNitrous OxideOxidoreductasesParacoccus denitrificansPlasmidsBacterial ProteinsDNA PrimersEscherichia coli ProteinsGlutamic AcidNitric Oxidenitric-oxide reductaseNitrous OxideOxidoreductasesRecombinant Proteins

Identifiers

PMID16961460
PMCPMC1698692
OpenAlexW2061558871

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.