Evidence map›Paper›PMID 16958618›Full record

ArticleThe Biochemical journal2007

Hypoxia-induced assembly of prolyl hydroxylase PHD3 into complexes: implications for its activity and susceptibility for degradation by the E3 ligase Siah2.

Koh Nakayama, Stefan Gazdoiu, Robert Abraham, Zhen-Qiang Pan, Ze'ev Ronai

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 56 citations in OpenAlex.

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  15. von Hippel-Lindau-dependent patterns of RNA polymerase II hydroxylation in human renal clear cell carcinomas.Clinical cancer research : an official journal of the American Association for Cancer Research · 2010
    Article
  16. Article
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  19. The ubiquitin ligase Siah2 and the hypoxia response.Molecular cancer research : MCR · 2009
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Koh NakayamaSignal Transduction Program, Burnham Institute for Medical Research, La Jolla, CA 92037, USA.
Stefan Gazdoiu
Robert Abraham
Zhen-Qiang Pan
Ze'ev Ronai
Icahn School of Medicine at Mount Sinai · USSanford Burnham Prebys Medical Discovery Institute · USSynergy Pharmaceuticals (United States) · US

Funding

Novel Insights in the regulation of HIF1alpha StabilityR01CA111515 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI RONAI, ZEEV A. · 2004 to 2014
$3.8M
NCI NIH HHS R01 CA111515NCI NIH HHS R01CA111515
6 · The paper itself

Abstract

PHD1-3 (prolyl hydroxylases 1-3) catalyse the hydroxylation of HIF (hypoxia-inducible factor)-alpha subunit that triggers the substrate ubiquitination and subsequent degradation. The RING (really interesting new gene) finger E3 ligase Siah2 preferentially targets PHD3 for degradation. Here, we identify the requirements for such selective targeting. Firstly, PHD3 lacks an N-terminal extension found in PHD1 and PHD2; deletion of this domain from PHD1 and PHD2 renders them susceptible to degradation by Siah2. Secondly, PHD3 can homo- and hetero-multimerize with other PHDs. Consequently, PHD3 is found in high-molecular-mass fractions that were enriched in hypoxia. Interestingly, within the lower-molecular-mass complex, PHD3 exhibits higher specific activity towards hydroxylation of HIF-1alpha and co-localizes with Siah2, suggesting that Siah2 limits the availability of the more active form of PHD3. These findings provide new insight into the mechanism underlying the regulation of PHD3 availability and activity in hypoxia by the E3 ligase Siah2.

Indexed as

Cell HypoxiaCell LineDioxygenasesDNA-Binding ProteinsHumansHydroxylationHypoxia-Inducible Factor-Proline DioxygenasesKidneyKineticsNuclear ProteinsPlasmidsPolycomb-Group ProteinsProcollagen-Proline DioxygenaseRecombinant ProteinsSequence DeletionSeven in Absentia ProteinsDioxygenasesDNA-Binding ProteinsEGLN1 protein, humanEGLN3 protein, humanHypoxia-Inducible Factor-Proline DioxygenasesNuclear ProteinsPHF1 protein, humanPolycomb-Group ProteinsProcollagen-Proline DioxygenaseRecombinant ProteinsSeven in Absentia ProteinsTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID16958618
PMCPMC1698661
OpenAlexW2057798327

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.