Evidence map›Paper›PMID 16954377›Full record

ArticleMolecular and cellular biology2006

Identification of yin-yang regulators and a phosphorylation consensus for male germ cell-associated kinase (MAK)-related kinase.

Zheng Fu, Katherine A Larson, Raghu K Chitta, Sirlester A Parker, Benjamin E Turk, Matthew W Lawrence, Philipp Kaldis, Konstantin Galaktionov, Steven M Cohn, Jeffrey Shabanowitz and 2 more

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Cyclin-dependent kinases: Masters of the eukaryotic universe.Wiley interdisciplinary reviews. RNA · 2023
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Phosphosite T674A mutation in kinesin family member 3A fails to reproduce tissue and ciliary defects characteristic of CILK1 loss of function.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Zheng FuDepartment of Pharmacology, University of Virginia School of Medicine, Charlottesville, VA 22908-0735, USA.
Katherine A Larson
Raghu K Chitta
Sirlester A Parker
Benjamin E Turk
Matthew W Lawrence
Philipp Kaldis
Konstantin Galaktionov
Steven M Cohn
Jeffrey Shabanowitz
Donald F Hunt
Thomas W Sturgill
Yale University · USBaylor College of Medicine · USNational Cancer Institute · USUniversity of Virginia · US

Funding

PROTEIN SEQUENCING BY TANDEM MASS SPECTROMETRYR01GM037537 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HUNT, DONALD F · 1987 to 2023
$17.8M
Growth Factor Signaling in Intestinal DevelopmentR01DK064751 · NIDDK · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI COHN, STEVEN M · 2004 to 2009
$1.6M
Regulation and Function of MAPKAP KinasesR01GM062890 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI STURGILL, THOMAS W · 2002 to 2005
$1.2M
NIDDK NIH HHS DK064751NIDDK NIH HHS R01 DK064751NIGMS NIH HHS GM37537NIGMS NIH HHS GM62890NIGMS NIH HHS R01 GM037537NIGMS NIH HHS R01 GM062890
6 · The paper itself

Abstract

MAK (male germ cell-associated protein kinase) and MRK/ICK (MAK-related kinase/intestinal cell kinase) are human homologs of Ime2p in Saccharomyces cerevisiae and of Mde3 and Pit1 in Schizosaccharomyces pombe and are similar to human cyclin-dependent kinase 2 (CDK2) and extracellular signal-regulated kinase 2 (ERK2). MAK and MRK require dual phosphorylation in a TDY motif catalyzed by an unidentified human threonine kinase and tyrosine autophosphorylation. Herein, we establish that human CDK-related kinase CCRK (cell cycle-related kinase) is an activating T157 kinase for MRK, whereas active CDK7/cyclin H/MAT1 complexes phosphorylate CDK2 but not MRK. Protein phosphatase 5 (PP5) interacts with MRK in a complex and dephosphorylates MRK at T157 in vitro and in situ. Thus, CCRK and PP5 are yin-yang regulators of T157 phosphorylation. To determine a substrate consensus, we screened a combinatorial peptide library with active MRK. MRK preferentially phosphorylates R-P-X-S/T-P sites, with the preference for arginine at position -3 (P-3) being more stringent than for prolines at P-2 and P+1. Using the consensus, we identified a putative phosphorylation site (RPLT(1080)S) for MRK in human Scythe, an antiapoptotic protein that interacts with MRK. MRK phosphorylates Scythe at T1080 in vitro as determined by site-directed mutagenesis and mass spectrometry, supporting the consensus and suggesting Scythe as a physiological substrate for MRK.

Indexed as

Consensus SequenceGene Expression RegulationAmino Acid MotifsAmino Acid SequenceCell LineCyclin-Dependent Kinase-Activating KinaseCyclin-Dependent KinasesDown-RegulationHumansHydrogen PeroxideMolecular ChaperonesMolecular Sequence DataNuclear ProteinsPhosphoprotein PhosphatasesPhosphorylationProteinsBAG6 protein, humanCCRK protein, humanCDK7 protein, humanCILK1 protein, humanCyclin-Dependent Kinase-Activating KinaseCyclin-Dependent KinasesHydrogen PeroxideMolecular ChaperonesNuclear ProteinsPhosphoprotein Phosphatasesprotein phosphatase 5ProteinsProtein Serine-Threonine Kinases

Identifiers

PMID16954377
PMCPMC1636783
OpenAlexW2118033742

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.