Evidence map›Paper›PMID 16954227›Full record

ArticleJournal of clinical microbiology2006

Genetic variability in the G protein gene of group A and B respiratory syncytial viruses from India.

Shama Parveen, Wayne M Sullender, Karen Fowler, Elliot J Lefkowitz, Suresh Kumar Kapoor, Shobha Broor

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 125 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Phylogenetic and phylodynamic analysis of respiratory syncytial virus strains circulating in children less than five years of age in Karachi-Pakistan.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2024
    Article
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  8. Article
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  14. Epidemiological and genetic characteristics of respiratory syncytial virus infection in children from Hangzhou after the peak of COVID-19.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2023
    Article
  15. Observational
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  20. Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Shama ParveenDepartment of Microbiology, All India Institute of Medical Sciences, New Delhi 110029, India.
Wayne M Sullender
Karen Fowler
Elliot J Lefkowitz
Suresh Kumar Kapoor
Shobha Broor
All India Institute of Medical Sciences · INAssociation of Maternal and Child Health Programs · USPediatrics and Genetics · USUniversity of Alabama at Birmingham · US

Funding

Genetic Variability among the G Proteins of RSVR03AI050693 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SULLENDER, WAYNE M · 2001 to 2003
$208k
NIAID NIH HHS AI50693NIAID NIH HHS R03 AI050693
6 · The paper itself

Abstract

Respiratory syncytial virus (RSV) is the most commonly identified viral agent of acute respiratory tract infection (ARI) of young children and causes repeat infections throughout life. Limited data are available on the molecular epidemiology of RSV from developing countries, including India. This study reports on the genetic variability in the glycoprotein G gene among RSV isolates from India. Reverse transcription-PCR for a region of the RSV G protein gene was done with nasopharyngeal aspirates (NPAs) collected in a prospective longitudinal study in two rural villages near Delhi and from children with ARI seen in an urban hospital. Nucleotide sequence comparisons among 48 samples demonstrated a higher prevalence of group A (77%) than group B (23%) RSV isolates. The level of genetic variability was higher among the group A viruses (up to 14%) than among the group B viruses (up to 2%). Phylogenetic analysis revealed that both the GA2 and GA5 group A RSV genotypes were prevalent during the 2002-2003 season and that genotype GA5 was predominant in the 2003-2004 season, whereas during the 2004-2005 season both genotype GA5 and genotype BA, a newly identified group B genotype, cocirculated in almost equal proportions. Comparison of the nonsynonymous mutation-to-synonymous mutation ratios (dN/dS) revealed greater evidence for selective pressure between the GA2 and GA5 genotypes (dN/dS, 1.78) than within the genotypes (dN/dS, 0.69). These are among the first molecular analyses of RSV strains from the second most populous country in the world and will be useful for comparisons to candidate vaccine strains.

Indexed as

Genetic VariationAcute DiseaseAmino Acid SequenceChild, PreschoolHospitals, UrbanHumansIndiaInfantInfant, NewbornMolecular EpidemiologyMolecular Sequence DataNasopharynxPhylogenyPrevalenceRespiratory Syncytial Virus, HumanRespiratory Syncytial Virus InfectionsG glycoprotein, Respiratory syncytial virusViral Fusion Proteins

Identifiers

PMID16954227
PMCPMC1594720
OpenAlexW2103103974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.