Evidence map›Paper›PMID 16953889›Full record

ArticleBMC genomics2006

Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts.

Claudia M Romero, David DeShazer, Tamara Feldblyum, Jacques Ravel, Donald Woods, H Stanley Kim, Yan Yu, Catherine M Ronning, William C Nierman

Abstract read
In one paragraph

Article in BMC genomics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Sequencing-Based Genotyping of PakistaniPathogens (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Antibodies againstInfection and immunity · 2017
    Article
  9. Article
  10. Article
  11. Article
  12. Twenty years of bacterial genome sequencing.Nature reviews. Microbiology · 2015
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Critical protective role for MCP-1 in pneumonic Burkholderia mallei infection.Journal of immunology (Baltimore, Md. : 1950) · 2010
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Claudia M RomeroThe Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA. cromero@mail.ucf.edu
David DeShazer
Tamara Feldblyum
Jacques Ravel
Donald Woods
H Stanley Kim
Yan Yu
Catherine M Ronning
William C Nierman

Funding

SEQUENCING THE GENOME BURKHOLDERIA MALLEIU01AI049037 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI NIERMAN, WILLIAM CHARLES · 2000 to 2001
$2.1M
Regulation of Burkholderia mallei virulence genesR01AI056006 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI NIERMAN, WILLIAM CHARLES · 2003 to 2005
$1.1M
Microarray Expression Analysis of Burkholderia MalleiR01AI050565 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI NIERMAN, WILLIAM CHARLES · 2001 to 2003
$877k
NIAID NIH HHS N01 AI030071NIAID NIH HHS R01 AI050565NIAID NIH HHS R01 AI056006NIAID NIH HHS R01AI50565NIAID NIH HHS R01AI56006NIAID NIH HHS U01AI49037A
6 · The paper itself

Abstract

backgroundMore than 12,000 simple sequence repeats (SSRs) have been identified in the genome of Burkholderia mallei ATCC 23344. As a demonstrated mechanism of phase variation in other pathogenic bacteria, these may function as mutable loci leading to altered protein expression or structure variation. To determine if such alterations are occurring in vivo, the genomes of various single-colony passaged B. mallei ATCC 23344 isolates, one from each source, were sequenced from culture, a mouse, a horse, and two isolates from a single human patient, and the sequence compared to the published B. mallei ATCC 23344 genome sequence.

resultsForty-nine insertions and deletions (indels) were detected at SSRs in the five passaged strains, a majority of which (67.3%) were located within noncoding areas, suggesting that such regions are more tolerant of sequence alterations. Expression profiling of the two human passaged isolates compared to the strain before passage revealed alterations in the mRNA levels of multiple genes when grown in culture.

conclusionThese data support the notion that genome variability upon passage is a feature of B. mallei ATCC23344, and that within a host B. mallei generates a diverse population of clones that accumulate genome sequence variation at SSR and other loci.

Indexed as

AnimalsBurkholderia malleiGene DeletionGene Expression ProfilingGenome, BacterialGlandersHorsesHumansMiceMice, Inbred BALB CMinisatellite RepeatsMutationOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideSequence Analysis, DNA

Identifiers

PMID16953889
PMCPMC1574311

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.