ArticlePlanta2007
Major differences observed in transcript profiles of blueberry during cold acclimation under field and cold room conditions.
Article in Planta, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed, 72 citations in OpenAlex.
- Integrated Transcriptomic and Proteomic Analysis Reveals Molecular Mechanisms of the Cold Stress Response during the Overwintering Period in Blueberries (Plants (Basel, Switzerland) · 2024Article
- There and back again; historical perspective and future directions forHorticulture research · 2022Article
- Genetic loci associated with winter survivorship in diverse lowland switchgrass populations.The plant genome · 2021Article
- High-Density Linkage Map Construction and QTL Identification in a Diploid Blueberry Mapping Population.Frontiers in plant science · 2021Article
- Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset.BMC plant biology · 2020Article
- Genomic Prediction for Winter Survival of Lowland Switchgrass in the Northern USA.G3 (Bethesda, Md.) · 2019Article
- Transcriptome analysis and annotation: SNPs identified from single copy annotated unigenes of three polyploid blueberry crops.PloS one · 2019Article
- Dissecting Key Adaptation Traits in the Polyploid PerennialFrontiers in plant science · 2018Article
- Design and Sampling Plan Optimization for RT-qPCR Experiments in Plants: A Case Study in Blueberry.Frontiers in plant science · 2016Article
- Breeding blueberries for a changing global environment: a review.Frontiers in plant science · 2015Review
- Article
- Cold Treatment Breaks Dormancy but Jeopardizes Flower Quality in Camellia japonica L.Frontiers in plant science · 2015Article
- Transcriptome sequencing and identification of cold tolerance genes in hardy Corylus species (C. heterophylla Fisch) floral buds.PloS one · 2014Article
- Transcriptome profiling of fruit development and maturation in Chinese white pear (Pyrus bretschneideri Rehd).BMC genomics · 2013Article
- RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions.BMC genomics · 2013Article
- Transcriptomic and metabolomic analysis of Yukon Thellungiella plants grown in cabinets and their natural habitat show phenotypic plasticity.BMC plant biology · 2012Article
- Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation.BMC plant biology · 2012Article
- Association analysis of frost tolerance in rye using candidate genes and phenotypic data from controlled, semi-controlled, and field phenotyping platforms.BMC plant biology · 2011Article
- Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.).BMC plant biology · 2010Article
- Gene expression profiles of MON810 and comparable non-GM maize varieties cultured in the field are more similar than are those of conventional lines.Transgenic research · 2009Article
Corrections and comments
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Authors and funding
8 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Our laboratory has been working toward increasing our understanding of the genetic control of cold hardiness in blueberry (Vaccinium section Cyanococcus) to ultimately use this information to develop more cold hardy cultivars for the industry. Here, we report using cDNA microarrays to monitor changes in gene expression at multiple times during cold acclimation under field and cold room conditions. Microarrays contained over 2,500 cDNA inserts, approximately half of which had been picked and single-pass sequenced from each of two cDNA libraries that were constructed from cold acclimated floral buds and non-acclimated floral buds of the fairly cold hardy cv. Bluecrop (Vaccinium corymbosum L.). Two biological samples were examined at each time point. Microarray data were analyzed statistically using t tests, ANOVA, clustering algorithms, and online analytical processing (OLAP). Interestingly, more transcripts were found to be upregulated under cold room conditions than under field conditions. Many of the genes induced only under cold room conditions could be divided into three major types: (1) genes associated with stress tolerance; (2) those that encode glycolytic and TCA cycle enzymes, and (3) those associated with protein synthesis machinery. A few of the genes induced only under field conditions appear to be related to light stress. Possible explanations for these differences are discussed in physiological context. Although many similarities exist in how plants respond during cold acclimation in the cold room and in the field environment, there are major differences suggesting caution should be taken in interpreting results based only on artificial, cold room conditions.
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