Evidence map›Paper›PMID 16951080›Full record

ArticleGenetics2006

A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L.

Rafaella Franch, Bruno Louro, Matina Tsalavouta, Dimitris Chatziplis, Costas S Tsigenopoulos, Elena Sarropoulou, Jenny Antonello, Andonis Magoulas, Constantinos C Mylonas, Massimiliano Babbucci and 4 more

Abstract readComparative Study
In one paragraph

Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

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  9. Genomic analysis ofCommunications biology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Rafaella FranchDepartment of Public Health, University of Padova, 35121 Padova, Italy.
Bruno Louro
Matina Tsalavouta
Dimitris Chatziplis
Costas S Tsigenopoulos
Elena Sarropoulou
Jenny Antonello
Andonis Magoulas
Constantinos C Mylonas
Massimiliano Babbucci
Tomaso Patarnello
Deborah M Power
Giorgos Kotoulas
Luca Bargelloni

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gilthead sea bream (Sparus aurata L.) is a marine fish of great importance for fisheries and aquaculture. It has also a peculiar sex-determination system, being a protandrous hermaphrodite. Here we report the construction of a first-generation genetic linkage map for S. aurata, based on 204 microsatellite markers. Twenty-six linkage groups (LG) were found. The total map length was 1241.9 cM. The ratio between sex-specific map lengths was 1:1.2 (male:female). Comparison with a preliminary radiation hybrid (RH) map reveals a good concordance, as all markers located in a single LG are located in a single RH group, except for Ad-25 and CId-31. Comparison with the Tetraodon nigroviridis genome revealed a considerable number of evolutionary conserved regions (ECRs) between the two species. The mean size of ECRs was 182 bp (sequence identity 60-90%). Forty-one ECRs have a known chromosomal location in the pufferfish genome. Despite the limited number of anchoring points, significant syntenic relationships were found. The linkage map presented here provides a robust comparative framework for QTL analysis in S. aurata and is a step toward the identification of genetic loci involved both in the determination of economically important traits and in the individual timing of sex reversal.

Indexed as

Chromosome MappingGenetic LinkageMicrosatellite RepeatsAnimalsFemaleGenetic MarkersHermaphroditic OrganismsMaleMolecular Sequence DataSea BreamSex Determination ProcessesGenetic Markers

Identifiers

PMID16951080
PMCPMC1602104

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.