ArticleGenetics2006
Testing for effects of recombination rate on nucleotide diversity in natural populations of Arabidopsis lyrata.
Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
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Who cites it
38 citing papers in PubMed, 73 citations in OpenAlex.
- QTL identification and characterization of the recombination landscape of the mountain pine beetle (Dendroctonus ponderosae).G3 (Bethesda, Md.) · 2025Article
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- High Resolution HLA ∼A, ∼B, ∼C, ∼DRB1, ∼DQA1, and ∼DQB1 Diversity in South African Populations.Frontiers in genetics · 2022Article
- Population Genomics of Transitions to Selfing in Brassicaceae Model Systems.Methods in molecular biology (Clifton, N.J.) · 2020Article
- Impact of demography on linked selection in two outcrossing Brassicaceae species.Ecology and evolution · 2019Article
- Relationship Among Intron Length, Gene Expression, and Nucleotide Diversity in the Pacific Oyster Crassostrea gigas.Marine biotechnology (New York, N.Y.) · 2018Article
- Chromosome arm-specific patterns of polymorphism associated with chromosomal inversions in the major African malaria vector, Anopheles funestus.Molecular ecology · 2017Article
- HLA class I haplotype diversity is consistent with selection for frequent existing haplotypes.PLoS computational biology · 2017Article
- Sequencing of Single Pollen Nuclei Reveals Meiotic Recombination Events at Megabase Resolution and Circumvents Segregation Distortion Caused by Postmeiotic Processes.Frontiers in plant science · 2017Article
- Contrasting patterns of nucleotide polymorphism suggest different selective regimes within different parts of theHereditas · 2017Article
- Article
- A Genomic Map of the Effects of Linked Selection in Drosophila.PLoS genetics · 2016Article
- The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms.BMC evolutionary biology · 2015Article
- Lineage-specific sequence evolution and exon edge conservation partially explain the relationship between evolutionary rate and expression level in A. thaliana.Molecular ecology · 2015Article
- The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression.The Plant journal : for cell and molecular biology · 2014Article
- Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora.PLoS genetics · 2014Article
- The impact of linked selection on plant genomic variation.Briefings in functional genomics · 2014Article
- Genomic signatures of selection at linked sites: unifying the disparity among species.Nature reviews. Genetics · 2013Review
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Corrections and comments
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Authors and funding
7 authors at 3 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We investigated DNA sequence diversity for loci on chromosomes 1 and 2 in six natural populations of Arabidopsis lyrata and tested for the role of natural selection in structuring genomewide patterns of variability, specifically examining the effects of recombination rate on levels of silent polymorphism. In contrast with theoretical predictions from models of genetic hitchhiking, maximum-likelihood-based analyses of diversity and divergence do not suggest reduction of diversity in the region of suppressed recombination near the centromere of chromosome 1, except in a single population from Russia, in which the pericentromeric region may have undergone a local selective sweep or demographic process that reduced variability. We discuss various possibilities that might explain why nucleotide diversity in most A. lyrata populations is not related to recombination rate, including genic recombination hotspots, and low gene density in the low recombination rate region.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.