Evidence map›Paper›PMID 16950838›Full record

ArticleBiophysical journal2006

Spatially resolved fluorescence correlation spectroscopy using a spinning disk confocal microscope.

Daniel R Sisan, Richard Arevalo, Catherine Graves, Ryan McAllister, Jeffrey S Urbach

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
6.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 69 citations in OpenAlex.

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  14. Dissecting chromatin interactions in living cells from protein mobility maps.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2011
    Article
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  17. A generative model of microtubule distributions, and indirect estimation of its parameters from fluorescence microscopy images.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2010
    Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Daniel R SisanDepartment of Physics, Georgetown University, Washington, DC, USA.
Richard Arevalo
Catherine Graves
Ryan McAllister
Jeffrey S Urbach
University of Washington · US

Funding

CRCNS:Mechanisms of Axonal Gradient DetectionR01NS046059 · NINDS · GEORGETOWN UNIVERSITY · PI URBACH, JEFFREY S. · 2002 to 2004
$756k
NINDS NIH HHS 5 R01 NS046059NINDS NIH HHS R01 NS046059
6 · The paper itself

Abstract

We develop an extension of fluorescence correlation spectroscopy (FCS) using a spinning disk confocal microscope. This approach can spatially map diffusion coefficients or flow velocities at up to approximately 10(5) independent locations simultaneously. Commercially available cameras with frame rates of 1000 Hz allow FCS measurements of systems with diffusion coefficients D~10(-7) cm(2)/s or smaller. This speed is adequate to measure small microspheres (200-nm diameter) diffusing in water, or hindered diffusion of macromolecules in complex media (e.g., tumors, cell nuclei, or the extracellular matrix). There have been a number of recent extensions to FCS based on laser scanning microscopy. Spinning disk confocal microscopy, however, has the potential for significantly higher speed at high spatial resolution. We show how to account for a pixel size effect encountered with spinning disk confocal FCS that is not present in standard or scanning FCS, and we introduce a new method to correct for photobleaching. Finally, we apply spinning disk confocal FCS to microspheres diffusing in Type I collagen, which show complex spatially varying diffusion caused by hydrodynamic and steric interactions with the collagen matrix.

Indexed as

AnimalsBiophysicsCollagenDiffusionLightMagnetic Resonance SpectroscopyMicroscopy, ConfocalMicrospheresModels, StatisticalPolyethylene GlycolsRatsReproducibility of ResultsSoftwareSpectrometry, FluorescenceSpectrophotometryCollagenPolyethylene Glycols

Identifiers

PMID16950838
PMCPMC1635679
OpenAlexW2021499811

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.