Evidence map›Paper›PMID 16950398›Full record

ArticleJournal of molecular biology2006

Structure of the SCAN domain from the tumor suppressor protein MZF1.

Francis C Peterson, Paulette L Hayes, Jeanette K Waltner, Alicia K Heisner, Davin R Jensen, Tara L Sander, Brian F Volkman

Erratum issuedAbstract read
In one paragraph

Article in Journal of molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Crystal optimization and preliminary diffraction data analysis of the SCAN domain of Zfp206.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Francis C PetersonDepartment of Biochemistry, Medical College of Wisconsin, 8701 Watertown Plank Road Milwaukee, WI 53226, USA.
Paulette L Hayes
Jeanette K Waltner
Alicia K Heisner
Davin R Jensen
Tara L Sander
Brian F Volkman
Medical College of Wisconsin · US

Funding

Center for Eukaryotic Structural GenomicsP50GM064598 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI MARKLEY, JOHN L · 2001 to 2004
$23.7M
Specialized Center for Eukaryotic Structural GenomicsU54GM074901 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2005 to 2009
$18.9M
NIGMS NIH HHS 1 U54 GM074901-01NIGMS NIH HHS P50 GM064598NIGMS NIH HHS P50 GM64598NIGMS NIH HHS U54 GM074901
6 · The paper itself

Abstract

The SCAN domain mediates interactions between members of a subfamily of zinc-finger transcription factors and is found in more than 60 C2H2 zinc finger genes in the human genome, including the tumor suppressor gene myeloid zinc finger 1 (MZF1). Glutathione-S-transferase pull-down assays showed that the MZF1 SCAN domain self-associates, and a Kd value of 600 nM was measured by intrinsic tryptophan fluorescence polarization. The MZF1 structure determined by NMR spectroscopy revealed a domain-swapped dimer. Each monomer consists of five alpha helices in two subdomains connected by the alpha2-alpha3 loop. Residues from helix 3 of each monomer compose the core of the dimer interface, while the alpha1-alpha2 loop and helix 2 pack against helices 3 and 5 from the opposing monomer. Comprehensive sequence analysis is coupled with the first high-resolution structure of a SCAN dimer to provide an initial view of the recognition elements that govern dimerization for this large family of transcription factors.

Indexed as

Amino Acid SequenceDimerizationDNA-Binding ProteinsHumansIntracellular Signaling Peptides and ProteinsKruppel-Like Transcription FactorsModels, ChemicalModels, MolecularMolecular Sequence DataProtein Structure, TertiaryTrans-ActivatorsTranscription FactorsZinc FingersDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsKruppel-Like Transcription FactorsMZF1 protein, humanSCAND1 protein, humanTrans-ActivatorsTranscription Factors

Identifiers

PMID16950398
PMCPMC1941711
OpenAlexW2051528760

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.