ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2006
Tall fescue genomic SSR markers: development and transferability across multiple grass species.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.
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Who cites it
51 citing papers in PubMed, 131 citations in OpenAlex.
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- Revisiting Phryma leptostachya L.: phylogenetic relationships and biogeographical patterns from complete plastome.BMC plant biology · 2025Article
- Development of microsatellite markers for sister species Linum suffruticosum and Linum tenuifolium in their overlapping ranges.Molecular biology reports · 2023Article
- Analysis of Genetic Diversity of Fescue Populations from the Highlands of Bolivia Using EST-SSR Markers.Genes · 2022Article
- Insight into morphological and molecular variations across Iranian spinach landraces.Molecular biology reports · 2021Article
- Development of Novel Genomic Simple Sequence Repeat (g-SSR) Markers and Their Validation for Genetic Diversity Analyses in Kalmegh [Plants (Basel, Switzerland) · 2020Article
- Genome-wide development of miRNA-based SSR markers in Cleistogenes songorica and analysis of their transferability to Gramineae/non-Gramineae species.Journal of applied genetics · 2020Article
- Genetic structure and diversity analysis of tall fescue populations by EST-SSR and ISSR markers.Molecular biology reports · 2020Article
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- Development of Polymorphic Simple Sequence Repeat Markers using High-Throughput Sequencing in Button Mushroom (Mycobiology · 2018Article
- Cross-species transferability of EST-SSR markers developed from the transcriptome of Melilotus and their application to population genetics research.Scientific reports · 2017Article
- Development of Genome-Wide SSR Markers from Angelica gigas Nakai Using Next Generation Sequencing.Genes · 2017Article
- The Complete Chloroplast Genome Sequences of Fritillaria ussuriensis Maxim. and Fritillaria cirrhosa D. Don, and Comparative Analysis with Other Fritillaria Species.Molecules (Basel, Switzerland) · 2017Article
- Development and Molecular Characterization of Novel Polymorphic Genomic DNA SSR Markers inMycobiology · 2017Article
- De novo transcriptome analysis of rose-scented geranium provides insights into the metabolic specificity of terpene and tartaric acid biosynthesis.BMC genomics · 2017Article
- Characterization and development of EST-SSR markers in sweet potato (Ipomoea batatas (L.) Lam).3 Biotech · 2016Article
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Simple sequence repeat (SSR) markers are highly informative and widely used for genetic and breeding studies. Currently, a very limited number of SSR markers are available for tall fescue (Festuca arundinacea Schreb.) and other forage grass species. A tall fescue genomic library enriched in (GA/CT)( n ) repeats was used to develop primer pairs (PPs) flanking SSRs and assess PP functionality across different forage, cereal, and turf grass species. A total of 511 PPs were developed and assessed for their utility in six different grass species. The parents and a subset of a tall fescue mapping population were used to select PPs for mapping in tall fescue. Survey results revealed that 48% (in rice) to 66% (in tall fescue) of the PPs produced clean SSR-type amplification products in different grass species. Polymorphism rates were higher in tall fescue (68%) compared to other species (46% ryegrass, 39% wheat, and 34% rice). A set of 194 SSR loci (38%) were identified which amplified across all six species. Loci segregating in the tall fescue mapping population were grouped as loci segregating from the female parent (HD28-56, 37%), the male parent (R43-64, 37%), and both parents (26%). Three percent of the loci that were polymorphic between parents were monomorphic in the pseudo F1 mapping population and the remaining loci segregated. Sequencing of amplified products obtained from PP NFFAG428 revealed a very high level of sequence similarity among the grass species under study. Our results are the first report of genomic SSR marker development from tall fescue and they demonstrate the usefulness of these SSRs for genetic linkage mapping in tall fescue and cross-species amplification.
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