Evidence map›Paper›PMID 16943582›Full record

ArticleEndocrine2006

Patterns of gene expression in pituitary carcinomas and adenomas analyzed by high-density oligonucleotide arrays, reverse transcriptase-quantitative PCR, and protein expression.

Katharina H Ruebel, Alexey A Leontovich, Long Jin, Gail A Stilling, Heyu Zhang, Xiang Qian, Nobuki Nakamura, Bernd W Scheithauer, Kalman Kovacs, Ricardo V Lloyd

Abstract readComparative StudyValidation Study
PubMed Publisher
In one paragraph

Article in Endocrine, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 51 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. The Epigenomics of Pituitary Adenoma.Frontiers in endocrinology · 2019
    Review
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  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Katharina H RuebelDepartment of Laboratory Medicine and Pathology, Mayo Clinic College of Medicine, 200 First Street, SW, Rochester, MN 55905, USA.
Alexey A Leontovich
Long Jin
Gail A Stilling
Heyu Zhang
Xiang Qian
Nobuki Nakamura
Bernd W Scheithauer
Kalman Kovacs
Ricardo V Lloyd
Mayo Clinic · USUniversity of Toronto · CA

Funding

Studies of Normal and Neoplastic Human PituitariesR01CA090249 · NCI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI LLOYD, RICARDO VINCENT · 2001 to 2005
$1.2M
NCI NIH HHS CA 90249
6 · The paper itself

Abstract

Very few of the genes that are important in pituitary tumor initiation, progression, and metastasis have been identified to date. To identify potential genes that may be important in pituitary tumor progression and carcinoma development, we used Affymetrix GeneChip HGU-133A-oligonucleotide arrays, which contain more than 15,000 characterized genes from the human genome to study gene expression in an ACTH pituitary carcinoma metastatic to the liver and four pituitary adenomas. Reverse-transcriptase real-time quantitative- PCR (RT-qPCR) was then used to analyze 4 nonneoplastic pituitaries, 19 adenomas, and the ACTH carcinoma. A larger series of pituitary adenomas and carcinomas were also analyzed for protein expression using tissue microarrays (TMA) (n = 233) and by Western blotting (n = 18). There were 4298 genes that were differentially expressed among the adenomas compared to the carcinoma, with 2057 genes overexpressed and 2241 genes underexpressed in the adenomas. The beta-galactoside binding protein galactin-3 was underexpressed in some adenomas compared to the carcinomas. Prolactin (PRL) and ACTH tumors had the highest levels of expression of galectin-3. The human achaetescute homolog-1 ASCL1 (hASH-1) gene was also underexpressed in some adenomas compared to the carcinoma. Prolactin and ACTH tumors had the highest levels of expression of hASH-1. ID2, which has an important role in cell development and tumorigenesis, was underexpressed in some adenomas compared to the carcinomas. Transducin-like enhancer of split four/ Groucho (TLE-4) was over-expressed in adenomas compared to the ACTH carcinoma. The differential expression of these genes was validated by RT-qPCR, by immunohistochemistry using TMA and by Western blotting. These results indicate that the LGALS3, hASH1, ID2, and TLE-4 genes may have important roles in the development of pituitary carcinomas.

Indexed as

ACTH-Secreting Pituitary AdenomaAdenomaBlotting, WesternCarcinomaDNA-Binding ProteinsFollicle Stimulating HormoneGene Expression ProfilingGRB2 Adaptor ProteinGrowth Hormone-Secreting Pituitary AdenomaHumansImmunohistochemistryInhibitor of Differentiation Protein 2Luteinizing HormoneNuclear ProteinsOligonucleotide Array Sequence AnalysisPituitary NeoplasmsDNA-Binding ProteinsFollicle Stimulating HormoneGRB2 Adaptor ProteinGRB2 protein, humanID2 protein, humanInhibitor of Differentiation Protein 2Luteinizing HormoneNuclear ProteinsRepressor ProteinsTLE4 protein, human

Identifiers

PMID16943582
OpenAlexW1984396670

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.