Evidence map›Paper›PMID 16943425›Full record

ArticleMolecular and cellular biology2006

Antagonistic regulation of beta-globin gene expression by helix-loop-helix proteins USF and TFII-I.

Valerie J Crusselle-Davis, Karen F Vieira, Zhuo Zhou, Archana Anantharaman, Jörg Bungert

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. TFII-I/Gtf2i and Erythro-Megakaryopoiesis.Frontiers in physiology · 2020
    Article
  3. DNA·RNA triple helix formation can function as aProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Valerie J Crusselle-DavisDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida, P.O. Box 100245, 1600 SW Archer Road, Gainesville, FL 32610, USA.
Karen F Vieira
Zhuo Zhou
Archana Anantharaman
Jörg Bungert
University of Florida · US

Funding

STRUCTURE/FUNCTION OF THE HUMAN B-GLOBIN LCRR01DK052356 · NIDDK · UNIVERSITY OF FLORIDA · PI BUNGERT, JORG · 1997 to 2017
$4.7M
Locus control region function on inactive x-chromosomesR01DK058209 · NIDDK · UNIVERSITY OF FLORIDA · PI BUNGERT, JORG · 2001 to 2003
$648k
NIDDK NIH HHS DK 52356NIDDK NIH HHS DK 58209NIDDK NIH HHS R01 DK052356NIDDK NIH HHS R01 DK058209
6 · The paper itself

Abstract

The human beta-globin genes are expressed in a developmental stage-specific manner in erythroid cells. Gene-proximal cis-regulatory DNA elements and interacting proteins restrict the expression of the genes to the embryonic, fetal, or adult stage of erythropoiesis. In addition, the relative order of the genes with respect to the locus control region contributes to the temporal regulation of the genes. We have previously shown that transcription factors TFII-I and USF interact with the beta-globin promoter in erythroid cells. Herein we demonstrate that reducing the activity of USF decreased beta-globin gene expression, while diminishing TFII-I activity increased beta-globin gene expression in erythroid cell lines. Furthermore, a reduction of USF activity resulted in a significant decrease in acetylated H3, RNA polymerase II, and cofactor recruitment to the locus control region and to the adult beta-globin gene. The data suggest that TFII-I and USF regulate chromatin structure accessibility and recruitment of transcription complexes in the beta-globin gene locus and play important roles in restricting beta-globin gene expression to the adult stage of erythropoiesis.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell DifferentiationCells, CulturedEmbryo, MammalianErythroid CellsGlobinsHistone Deacetylase 3Histone DeacetylasesHumansK562 CellsMiceModels, Geneticp300-CBP Transcription FactorsProtein BindingRepressor ProteinsGlobinsGTF2I protein, humanHistone Deacetylase 3Histone Deacetylasesp300-CBP Transcription FactorsRepressor ProteinsRNA Polymerase IITranscription Factors, TFIIUpstream Stimulatory Factors

Identifiers

PMID16943425
PMCPMC1592872
OpenAlexW2118937247

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.