Evidence map›Paper›PMID 16942111›Full record

ArticleThe journal of physical chemistry. B2006

Probing folded and unfolded states of outer membrane protein a with steady-state and time-resolved tryptophan fluorescence.

Judy E Kim, Gitrada Arjara, John H Richards, Harry B Gray, Jay R Winkler

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Biophysics of α-synuclein membrane interactions.Biochimica et biophysica acta · 2012
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Tryptophan probes at the alpha-synuclein and membrane interface.The journal of physical chemistry. B · 2010
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Judy E KimBeckman Institute and Department of Chemistry, California Institute of Technology, Pasadena, California 91125, USA.
Gitrada Arjara
John H Richards
Harry B Gray
Jay R Winkler

Funding

Elucidating Protein Folding MechanismsR01GM068461 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI WINKLER, JAY R · 2003 to 2010
$2.2M
NIGMS NIH HHS GM068461NIGMS NIH HHS R01 GM068461
6 · The paper itself

Abstract

Steady-state and time-resolved fluorescence measurements on each of five native tryptophan residues in full-length and truncated variants of E. coli outer-membrane protein A (OmpA) have been made in folded and denatured states. Tryptophan singlet excited-state lifetimes are multiexponential and vary among the residues. In addition, substantial increases in excited-state lifetimes accompany OmpA folding, with longer lifetimes in micelles than in phospholipid bilayers. This finding suggests that the Trp environments of OmpA folded in micelles and phospholipid bilayers are different. Measurements of Trp fluorescence decay kinetics with full-length OmpA folded in brominated lipid vesicles reveal that W102 is the most distant fluorophore from the hydrocarbon core, while W7 is the closest. Steady-state and time-resolved polarized fluorescence measurements indicate reduced Trp mobility when OmpA is folded in a micelle, and even lower mobility when the protein is folded in a bilayer. The fluorescence properties of truncated OmpA, in which the soluble periplasmic domain is removed, only modestly differ from those of the full-length form, suggesting similar folded structures for the two forms under these conditions.

Indexed as

AnisotropyBacterial Outer Membrane ProteinsBiophysicsCircular DichroismDimyristoylphosphatidylcholineEscherichia coliKineticsMicellesMolecular ConformationMutationProtein FoldingProtein Structure, TertiarySpectrometry, FluorescenceTryptophanUreaBacterial Outer Membrane ProteinsDimyristoylphosphatidylcholineMicellesOMPA outer membrane proteinsTryptophanUrea

Identifiers

PMID16942111
PMCPMC2519049

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.