Evidence map›Paper›PMID 16939296›Full record

ArticleJournal of the American Chemical Society2006

Transfer of structural elements from compact to extended states in unsolvated ubiquitin.

Stormy L Koeniger, Samuel I Merenbloom, Sundarapandian Sevugarajan, David E Clemmer

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Article
  2. Structure and Stabilities of Solution and Gas Phase Protein Complexes.Journal of the American Society for Mass Spectrometry · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Diketopiperazine Formation from FPGThe journal of physical chemistry. B · 2021
    Article
  10. Influence of Solvents upon Diketopiperazine Formation of FPGThe journal of physical chemistry. B · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Action-FRET of a Gaseous Protein.Journal of the American Society for Mass Spectrometry · 2017
    Article
  19. Charge-Induced Unzipping of Isolated Proteins to a Defined Secondary Structure.Angewandte Chemie (International ed. in English) · 2016
    Article
  20. Infrared Spectroscopy of Mobility-Selected H+-Gly-Pro-Gly-Gly (GPGG).Journal of the American Society for Mass Spectrometry · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Stormy L KoenigerDepartment of Chemistry, Indiana University, Bloomington, Indiana 47405, USA.
Samuel I Merenbloom
Sundarapandian Sevugarajan
David E Clemmer

Funding

TRAININGP41RR018942 · NCRR · TRUSTEES OF INDIANA UNIVERSITY · PI REILLY, JAMES P. · 2005 to 2008
$3.9M
New proteome technologies: mapping adult D. melanogasterR01AG024547 · NIA · TRUSTEES OF INDIANA UNIVERSITY · PI CLEMMER, DAVID E. · 2005 to 2008
$955k
NCRR NIH HHS P41 RR018942NCRR NIH HHS P41-RR018942NIA NIH HHS AG-024547-01NIA NIH HHS R01 AG024547
6 · The paper itself

Abstract

Multidimensional ion mobility spectrometry techniques (IMS-IMS and IMS-IMS-IMS) combined with mass spectrometry are used to study structural transitions of ubiquitin ions in the gas phase. It is possible to select and activate narrow distributions of compact and partially folded conformation types and examine new distributions of structures that are formed. Different compact conformations unfold, producing a range of new partially folded states and three resolvable peaks associated with elongated conformers. Under gentle activation conditions, the final populations of the three elongated forms depend on the initial structures of the selected ions. This requires that some memory of the compact state (most likely secondary structure) is preserved along the unfolding pathway. Activation of selected, partially folded intermediates (formed from specific compact states) leads to elongated state populations that are consistent with the initial selected compact form-evidence that intermediates not only retain elements of initial structure but also are capable of transmitting structure to final states.

Indexed as

Protein FoldingIonsPhase TransitionProtein ConformationSolubilitySpectrometry, Mass, Electrospray IonizationTandem Mass SpectrometryUbiquitinIonsUbiquitin

Identifiers

PMID16939296
PMCPMC2507767

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.