Evidence map›Paper›PMID 16939283›Full record

ArticleJournal of the American Chemical Society2006

Structural and functional consequences of an amide-to-ester substitution in the selectivity filter of a potassium channel.

Francis I Valiyaveetil, Matthew Sekedat, Roderick MacKinnon, Tom W Muir

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Harnessing PNature communications · 2026
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  13. Using protein backbone mutagenesis to dissect the link between ion occupancy and C-type inactivation in K+ channels.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  14. An evaluation of peptide-bond isosteres.Chembiochem : a European journal of chemical biology · 2011
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Francis I ValiyaveetilLaboratory of Molecular Neurobiology and Biophysics, The Rockefeller University, New York, New York 10021, USA.
Matthew Sekedat
Roderick MacKinnon
Tom W Muir

Funding

Voltage-Dependent Ion Channel GatingR01GM043949 · NIGMS · ROCKEFELLER UNIVERSITY · PI MACKINNON, RODERICK · 1990 to 2024
$10.1M
Regulation and Folding of a Multidomain Adaptor ProteinR01GM055843 · NIGMS · ROCKEFELLER UNIVERSITY · PI MUIR, TOM · 2002 to 2009
$2.7M
Segmental Labeling for Protein Structure by NMRR01EB001991 · NIBIB · ROCKEFELLER UNIVERSITY · PI MUIR, TOM · 2003 to 2007
$2.2M
CHEMICAL BASIS OF THE SH3 DOMAIN STRUCTURER29GM055843 · NIGMS · ROCKEFELLER UNIVERSITY · PI MUIR, TOM W · 1997 to 2001
$217k
NIBIB NIH HHS EB001991NIBIB NIH HHS R01 EB001991NIGMS NIH HHS GM43949NIGMS NIH HHS GM55843NIGMS NIH HHS R01 GM043949NIGMS NIH HHS R01 GM055843NIGMS NIH HHS R29 GM055843
6 · The paper itself

Abstract

The selectivity filter of K(+) channels comprises four contiguous ion binding sites, S1 through S4. Structural and functional data indicate that the filter contains on average two K(+) ions at any given time and that these ions reside primarily in two configurations, namely to sites S1 and S3 or to sites S2 and S4. Maximum ion flux through the channel is expected to occur when the energy difference between these two binding configurations is zero. In this study, we have used protein semisynthesis to selectively perturb site 1 within the filter of the KcsA channel through use of an amide-to-ester substitution. The modification alters K(+) conduction properties. The structure of the selectivity filter is largely unperturbed by the modification, despite the loss of an ordered water molecule normally located just behind the filter. Introduction of the ester moiety was found to alter the distribution of K(+), Rb(+,) and Cs(+) within the filter, with the most dramatic change found for Rb(+). The redistribution of ions is associated with the appearance of a partially hydrated ion just external to the filter, at a position where no ion is observed in the wild-type channel. The appearance of this new ion-binding site creates a change in the distance between a pair of K(+) ions some fraction of the time, apparently leading to a reduction in the ion conduction rate. Importantly, this finding suggests that the selectivity filter of a potassium channel is optimized both in terms of absolute ion occupancy and in terms of the separation in distance between the conducting ions.

Indexed as

Ion Channel GatingModels, BiologicalModels, ChemicalPotassium ChannelsAmidesAnimalsBinding SitesCells, CulturedCesiumCrystallography, X-RayElectrophysiologyEstersLipid BilayersMiceModels, MolecularMutationAmidesCesiumEstersLipid BilayersPotassium ChannelsRubidium

Identifiers

PMID16939283
PMCPMC2546570

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.