Evidence map›Paper›PMID 16938853›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment.

Brian Palenik, Qinghu Ren, Chris L Dupont, Garry S Myers, John F Heidelberg, Jonathan H Badger, Ramana Madupu, William C Nelson, Lauren M Brinkac, Robert J Dodson and 7 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 258 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Genomic insights into the adaptation ofFrontiers in microbiology · 2023
    Article
  10. Article
  11. Article
  12. Spatio-Temporal Variation ofFrontiers in microbiology · 2022
    Article
  13. Review
  14. Amino Acid Analog Induces Stress Response in MarineApplied and environmental microbiology · 2021
    Article
  15. Investigating zinc toxicity responses in marineMicrobiology (Reading, England) · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

Brian PalenikScripps Institution of Oceanography, University of California at San Diego, La Jolla, CA 92093, USA.
Qinghu Ren
Chris L Dupont
Garry S Myers
John F Heidelberg
Jonathan H Badger
Ramana Madupu
William C Nelson
Lauren M Brinkac
Robert J Dodson
A Scott Durkin
Sean C Daugherty
Stephen A Sullivan
Hoda Khouri
Yasmin Mohamoud
Rebecca Halpin
Ian T Paulsen
Scripps Institution of Oceanography · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coastal aquatic environments are typically more highly productive and dynamic than open ocean ones. Despite these differences, cyanobacteria from the genus Synechococcus are important primary producers in both types of ecosystems. We have found that the genome of a coastal cyanobacterium, Synechococcus sp. strain CC9311, has significant differences from an open ocean strain, Synechococcus sp. strain WH8102, and these are consistent with the differences between their respective environments. CC9311 has a greater capacity to sense and respond to changes in its (coastal) environment. It has a much larger capacity to transport, store, use, or export metals, especially iron and copper. In contrast, phosphate acquisition seems less important, consistent with the higher concentration of phosphate in coastal environments. CC9311 is predicted to have differences in its outer membrane lipopolysaccharide, and this may be characteristic of the speciation of some cyanobacterial groups. In addition, the types of potentially horizontally transferred genes are markedly different between the coastal and open ocean genomes and suggest a more prominent role for phages in horizontal gene transfer in oligotrophic environments.

Indexed as

Adaptation, PhysiologicalEnvironmentGenome, BacterialBase PairingBase SequenceChromosomes, BacterialFrameshift MutationModels, BiologicalMolecular Sequence DataOpen Reading FramesOperonPhylogenyPoint MutationRNA, TransferSynechococcusRNA, Transfer

Identifiers

PMID16938853
PMCPMC1569201
OpenAlexW2043474764

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.