Evidence map›Paper›PMID 16936060›Full record

ArticleApplied and environmental microbiology2006

Culture isolation and culture-independent clone libraries reveal new marine Synechococcus ecotypes with distinctive light and N physiologies.

Nathan A Ahlgren, Gabrielle Rocap

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Article in Applied and environmental microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

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52citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
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  10. Diversity strengthens competing teams.Royal Society open science · 2022
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  11. Review
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  13. Phylogenetic Structure ofFrontiers in microbiology · 2022
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  14. Spatio-Temporal Variation ofFrontiers in microbiology · 2022
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  15. Article
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  18. Whole-Genome Sequence of the CyanobacteriumMicrobiology resource announcements · 2020
    Article
  19. Article
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4 · The record

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5 · Who and what money

Authors and funding

2 authors.

Nathan A AhlgrenSchool of Oceanography, University of Washington, Box 357940, Seattle, WA 98195, USA.
Gabrielle Rocap

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine microbial communities often contain multiple closely related phylogenetic clades, but in many cases, it is still unclear what physiological traits differentiate these putative ecotypes. The numerically abundant marine cyanobacterium Synechococcus can be divided into at least 14 clades. In order to better understand ecotype differentiation in this genus, we assessed the diversity of a Synechococcus community from a well-mixed water column in the Sargasso Sea during March 2002, a time of year when this genus typically reaches its annual peak in abundance. Diversity was estimated from water sampled at three depths (approximately 5, 70, and 170 m) using both culture isolation and construction of cyanobacterial 16S-23S rRNA internal transcribed sequence clone libraries. Clonal isolates were obtained by enrichment with ammonium, nitrite, or nitrate as the sole N source, followed by pour plating. Each method sampled the in situ diversity differently. The combined methods revealed a total of seven Synechococcus phylotypes including two new putative ecotypes, labeled XV and XVI. Although most other isolates grow on nitrate, clade XV exhibited a reduced efficiency in nitrate utilization, and both clade XV and XVI are capable of chromatic adaptation, demonstrating that this trait is more widely distributed among Synechococcus strains than previously known. Thus, as in its sister genus Prochlorococcus, light and nitrogen utilization are important factors in ecotype differentiation in the marine Synechococcus lineage.

Indexed as

Gene LibraryLightBacterial Typing TechniquesCloning, MolecularCulture MediaDNA, Ribosomal SpacerMolecular Sequence DataNitrogenPhylogenyRNA, Ribosomal, 16SRNA, Ribosomal, 23SSeawaterSequence Analysis, DNASynechococcusCulture MediaDNA, Ribosomal SpacerNitrogenRNA, Ribosomal, 16SRNA, Ribosomal, 23S

Identifiers

PMID16936060
PMCPMC1636174

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.