Evidence map›Paper›PMID 16934294›Full record

ArticleJournal of molecular biology2006

Histidine triad-like motif of the rotavirus NSP2 octamer mediates both RTPase and NTPase activities.

Rodrigo Vasquez-Del Carpio, Fernando D Gonzalez-Nilo, Gonzalo Riadi, Zenobia F Taraporewala, John T Patton

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Structural basis of rotavirus RNA chaperone displacement and RNA annealing.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  7. Article
  8. Article
  9. Phosphorylation cascade regulates the formation and maturation of rotaviral replication factories.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Vaccine-derived NSP2 segment in rotaviruses from vaccinated children with gastroenteritis in Nicaragua.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2012
    Article
  16. Article
  17. Review
  18. Article
  19. Dual selection mechanisms drive efficient single-gene reverse genetics for rotavirus.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Rodrigo Vasquez-Del CarpioLaboratory of Infectious Diseases, NIAID, National Institutes of Health, Bethesda, MD 20892, USA.
Fernando D Gonzalez-Nilo
Gonzalo Riadi
Zenobia F Taraporewala
John T Patton
National Institute of Allergy and Infectious Diseases · USUniversity of Talca · CLNational Institutes of Health · US

Funding

MECHANISM OF ROTAVIRUS GENOME REPLICATION AND PACKAGINGZ01AI000754 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI PATTON, JOHN · 1996 to 2008
$1.1M
Intramural NIH HHSNIAID NIH HHS Z01 AI000754-10
6 · The paper itself

Abstract

Rotavirus NSP2 is an abundant non-structural RNA-binding protein essential for forming the viral factories that support replication of the double-stranded RNA genome. NSP2 exists as stable doughnut-shaped octamers within the infected cell, representing the tail-to-tail interaction of two tetramers. Extending diagonally across the surface of each octamer are four highly basic grooves that function as binding sites for single-stranded RNA. Between the N and C-terminal domains of each monomer is a deep electropositive cleft containing a catalytic site that hydrolyzes the gamma-beta phosphoanhydride bond of any NTP. The catalytic site has similarity to those of the histidine triad (HIT) family of nucleotide-binding proteins. Due to the close proximity of the grooves and clefts, we investigated the possibility that the RNA-binding activity of the groove promoted the insertion of the 5'-triphosphate moiety of the RNA into the cleft, and the subsequent hydrolysis of its gamma-beta phosphoanhydride bond. Our results show that NSP2 hydrolyzes the gammaP from RNAs and NTPs through Mg(2+)-dependent activities that proceed with similar reaction velocities, that require the catalytic His225 residue, and that produce a phosphorylated intermediate. Competition assays indicate that although both substrates enter the active site, RNA is the preferred substrate due to its higher affinity for the octamer. The RNA triphosphatase (RTPase) activity of NSP2 may account for the absence of the 5'-terminal gammaP on the (-) strands of the double-stranded RNA genome segments. This is the first report of a HIT-like protein with a multifunctional catalytic site, capable of accommodating both NTPs and RNAs during gammaP hydrolysis.

Indexed as

Acid Anhydride HydrolasesAmino Acid MotifsAmino Acid SequenceAmino Acid SubstitutionBase SequenceBinding SitesDNA, ViralHistidineKineticsModels, BiologicalMolecular Sequence DataMutagenesis, Site-DirectedNucleoside-TriphosphatasePhosphorylationProtein Structure, QuaternaryRecombinant ProteinsAcid Anhydride HydrolasesDNA, ViralHistidineNS35 protein, rotavirusNucleoside-TriphosphataseRecombinant ProteinsRNA-Binding ProteinsRNA triphosphataseRNA, ViralViral Nonstructural Proteins

Identifiers

PMID16934294
PMCPMC1924841
OpenAlexW2024938817

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.