Evidence map›Paper›PMID 16933988›Full record

ArticlePLoS pathogens2006

H-NS mediates the silencing of laterally acquired genes in bacteria.

Sacha Lucchini, Gary Rowley, Martin D Goldberg, Douglas Hurd, Marcus Harrison, Jay C D Hinton

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 326 papers.

0numbers the graph read from it
0cells of the map it votes in
326citing papers in PubMed
20.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

326 citing papers in PubMed, 557 citations in OpenAlex.

  1. Article
  2. A functional interplay ofMicrobiology spectrum · 2026
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  4. The divergentMicrobiology (Reading, England) · 2026
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  5. A plasmid-encoded H-NS protein selectively binds its own plasmid.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Characterizing the Impact of Nucleoid-Associated Proteins on HU-DNA Interactions by Live-Cell Single-Molecule Tracking.Chemphyschem : a European journal of chemical physics and physical chemistry · 2026
    Article
  8. How Salmonella Works Under Osmotic and Desiccation Stresses.Comprehensive reviews in food science and food safety · 2026
    Review
  9. AnMicrobiology spectrum · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. TheEcoSal Plus · 2025
    Review
  16. Article
  17. Review
  18. Nucleoid-associated proteins: molecular mechanisms in microbial adaptation.World journal of microbiology & biotechnology · 2025
    Review
  19. Deciphering theJournal of bacteriology · 2025
    Review
  20. Article

266 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Sacha LucchiniMolecular Microbiology Group, Institute of Food Research, Colney, Norwich, United Kingdom.
Gary Rowley
Martin D Goldberg
Douglas Hurd
Marcus Harrison
Jay C D Hinton
Norwich Research Park · GBOxford Gene Technology (United Kingdom) · GBQuadram Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histone-like nucleoid structuring protein (H-NS) is a modular protein that is associated with the bacterial nucleoid. We used chromatin immunoprecipitation to determine the binding sites of H-NS and RNA polymerase on the Salmonella enterica serovar Typhimurium chromosome. We found that H-NS does not bind to actively transcribed genes and does not co-localize with RNA polymerase. This shows that H-NS principally silences gene expression by restricting the access of RNA polymerase to the DNA. H-NS had previously been shown to preferentially bind to curved DNA in vitro. In fact, at the genomic level we discovered that the level of H-NS binding correlates better with the AT-content of DNA. This is likely to have evolutionary consequences because we show that H-NS binds to many Salmonella genes acquired by lateral gene transfer, and functions as a gene silencer. The removal of H-NS from the cell causes un-controlled expression of several Salmonella pathogenicity islands, and we demonstrate that this has deleterious consequences for bacterial fitness. Our discovery of this novel role for H-NS may have implications for the acquisition of foreign genes by enteric bacteria.

Indexed as

Gene Expression Regulation, BacterialGene SilencingGene Transfer, HorizontalBacterial ProteinsBinding SitesBiological EvolutionDNA, BacterialDNA-Binding ProteinsDNA-Directed RNA PolymerasesSalmonella entericaBacterial ProteinsDNA, BacterialDNA-Binding ProteinsDNA-Directed RNA PolymerasesH-NS protein, bacteria

Identifiers

PMID16933988
PMCPMC1550270
OpenAlexW1985963323

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.