Evidence map›Paper›PMID 16931590›Full record

ArticleThe Journal of molecular diagnostics : JMD2006

Microarray analysis of thyroid nodule fine-needle aspirates accurately classifies benign and malignant lesions.

Carrie C Lubitz, Stacy K Ugras, J Jacob Kazam, Biaxin Zhu, Theresa Scognamiglio, Yao-Tseng Chen, Thomas J Fahey

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it, 68 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Three-gene molecular diagnostic model for thyroid cancer.Thyroid : official journal of the American Thyroid Association · 2012
    Article
  10. Article
  11. Diagnostic utility of galectin-3 in thyroid cancer.The American journal of pathology · 2010
    Review
  12. Article
  13. Article
  14. Review
  15. Identification of genes differentially expressed in benign versus malignant thyroid tumors.Clinical cancer research : an official journal of the American Association for Cancer Research · 2008
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Carrie C LubitzDepartment of Surgery, Weill Cornell Medical College, Room A-983, 510 East 70th St., New York, NY 10021, USA. cclubitz@yahoo.com
Stacy K Ugras
J Jacob Kazam
Biaxin Zhu
Theresa Scognamiglio
Yao-Tseng Chen
Thomas J Fahey
Cornell University · USRutgers, The State University of New Jersey · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Current preoperative diagnostic procedures for thyroid nodules rely mainly on the cytological interpretation of fine-needle aspirates (FNAs). DNA microarray analysis has been shown to reliably distinguish benign and malignant thyroid nodules in surgically resected specimens, but its diagnostic potential in thyroid FNA has not been examined. In the present study, the expression profiles of 50 benign thyroid lesions and papillary thyroid carcinoma tissue samples were compared, generating a list of 25 differentially expressed genes from this training set. A test set of 22 FNA specimens was evaluated by unsupervised hierarchical cluster analysis using this gene list, and the results were compared to FNA cytology. FNA specimens were found to fall into three clusters: malignant (n = 10), benign (n = 7), and indeterminate (n = 5). The benign and malignant groups showed complete concordance with the final histological diagnosis except for one histologically benign lesion, which was rediagnosed as follicular variant of papillary thyroid carcinoma on histological review. Paired analysis between FNA and matched tissues samples illustrated adequate sampling with FNA. These results illustrate that microarray analysis of FNA is feasible and has the potential to improve the accuracy of FNA in categorizing benign from malignant lesions beyond routine cytological evaluation.

Indexed as

Gene Expression ProfilingBiopsy, Fine-NeedleCase-Control StudiesCluster AnalysisHumansMicroarray AnalysisSensitivity and SpecificityThyroid NeoplasmsThyroid Nodule

Identifiers

PMID16931590
PMCPMC1867621
OpenAlexW2166506625

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.