Evidence map›Paper›PMID 16928759›Full record

ArticleJournal of virology2006

The unique C termini of orthopoxvirus gamma interferon binding proteins are essential for ligand binding.

Anthony A Nuara, Hongdong Bai, Nanhai Chen, R Mark L Buller, Mark R Walter

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Poxvirus proteomics and virus-host protein interactions.Microbiology and molecular biology reviews : MMBR · 2009
    Review
  7. Structure and mechanism of IFN-gamma antagonism by an orthopoxvirus IFN-gamma-binding protein.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Anthony A NuaraSaint Louis University, Department of Molecular Microbiology and Immunology, 1402 South Grand Blvd., St. Louis, MO 63104, USA.
Hongdong Bai
Nanhai Chen
R Mark L Buller
Mark R Walter
Saint Louis University · USFleet Science Center · USScripps Research Institute · USUniversity of Alabama at Birmingham · US

Funding

STRUCTURE STUDIES ON PROTEINS THAT MODULATE IL-10 ACTIONR01AI047300 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WALTER, MARK R · 2001 to 2011
$3.4M
NIAID NIH HHS N01 AI015436NIAID NIH HHS R01 AI047300PHS HHS R01 A47300
6 · The paper itself

Abstract

The orthopoxviruses ectromelia virus (ECTV) and vaccinia virus (VACV) express secreted gamma interferon binding proteins (IFN-gammaBPs) with homology to the ligand binding domains of the host's IFN-gamma receptor (IFN-gammaR1). Homology between these proteins is limited to the extracellular portions of the IFN-gammaR1 and the first approximately 200 amino acids of the IFN-gammaBPs. The remaining 60 amino acids at the C termini of the IFN-gammaBPs contain a single cysteine residue shown to be important in covalent dimerization of the secreted proteins. The function of the remaining C-terminal domain (CTD) has remained elusive, yet this region is conserved within all orthopoxvirus IFN-gammaBPs. Using a series of C-terminal deletion constructs, we have determined that the CTD is essential for IFN-gamma binding despite having no predicted homology to the IFN-gammaR1. Truncation of the ECTV IFN-gammaBP by more than two amino acid residues results in a complete loss of binding activity for both murine IFN-gamma and human IFN-gamma (hIFN-gamma), as measured by surface plasmon resonance (SPR) and bioassay. Equivalent truncation of the VACV IFN-gammaBP resulted in comparable loss of hIFN-gamma binding activity by SPR. Full-length IFN-gammaBPs were observed to form higher-ordered structures larger than the previously reported dimers. Mutants that were unable to bind IFN-gamma with high affinity in SPR experiments failed to assemble into these higher-ordered structures and migrated as dimers. We conclude that the unique CTD of orthopoxvirus IFN-gammaBPs is important for the assembly of covalent homodimers as well as the assembly of higher-ordered structures essential for IFN-gamma binding.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCarrier ProteinsCell LineChlorocebus aethiopsDimerizationEctromelia virusHumansInterferon-gammaLigandsMolecular Sequence DataMutagenesisProtein BindingProtein Structure, QuaternaryProtein Structure, SecondaryCarrier ProteinsInterferon-gammaLigandsRecombinant ProteinsViral Proteins

Identifiers

PMID16928759
PMCPMC1641743
OpenAlexW2108983971

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.