Evidence map›Paper›PMID 16924124›Full record

ArticleThe journal of histochemistry and cytochemistry : official journal of the Histochemistry Society2006

Chromosome-specific DNA repeat probes.

Adolf Baumgartner, Jingly Fung Weier, Heinz-Ulrich G Weier

Open access · bronzeAbstract read
In one paragraph

Article in The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Cellular and genomic approaches for exploring structural chromosomal rearrangements.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020
    Review
  4. Full Karyotype Interphase Cell Analysis.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2018
    Article
  5. Article
  6. Article
  7. Bioinformatics tools allow targeted selection of chromosome enumeration probes and aneuploidy detection.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2013
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. DNA probe pooling for rapid delineation of chromosomal breakpoints.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2009
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Adolf BaumgartnerDepartment of Obstetrics, Gynecology and Reproductive Sciences, University of California, San Francisco, California, CA 94720, USA.
Jingly Fung Weier
Heinz-Ulrich G Weier
University of California, San Francisco · USLawrence Berkeley National Laboratory · US

Funding

Aneuploid Cells in the Human PlacentaR01HD045736 · NICHD · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WEIER, HEINZ-ULRICH G. · 2004 to 2006
$969k
RADIATION INDUCED THYROID CANCERR01CA080792 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WEIER, HEINZ-ULRICH G · 2000 to 2002
$856k
SPECTRAL IMAGING FOR PHENOTYPE ANALYSIS OF CANCER CELLSR33CA088258 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WEIER, HEINZ-ULRICH G · 2001 to 2002
$637k
Molecular/Genetic Studies on Human Placental DevelopmentK25HD041425 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WEIER, JINGLY F · 2002 to 2006
$520k
SPECTRAL IMAGING FOR PHENOTYPE ANALYSIS OF CANCER CELLSR21CA088258 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WEIER, HEINZ-ULRICH G · 2000 to 2000
$122k
NCI NIH HHS CA-80792NCI NIH HHS CA-88258NICHD NIH HHS HD-041425NICHD NIH HHS HD-045736NICHD NIH HHS K25 HD041425NICHD NIH HHS R01 HD045736
6 · The paper itself

Abstract

In research as well as in clinical applications, fluorescence in situ hybridization (FISH) has gained increasing popularity as a highly sensitive technique to study cytogenetic changes. Today, hundreds of commercially available DNA probes serve the basic needs of the biomedical research community. Widespread applications, however, are often limited by the lack of appropriately labeled, specific nucleic acid probes. We describe two approaches for an expeditious preparation of chromosome-specific DNAs and the subsequent probe labeling with reporter molecules of choice. The described techniques allow the preparation of highly specific DNA repeat probes suitable for enumeration of chromosomes in interphase cell nuclei or tissue sections. In addition, there is no need for chromosome enrichment by flow cytometry and sorting or molecular cloning. Our PCR-based method uses either bacterial artificial chromosomes or human genomic DNA as templates with alpha-satellite-specific primers. Here we demonstrate the production of fluorochrome-labeled DNA repeat probes specific for human chromosomes 17 and 18 in just a few days without the need for highly specialized equipment and without the limitation to only a few fluorochrome labels.

Indexed as

DNA ProbesChromosomes, Artificial, BacterialChromosomes, Human, Pair 17Chromosomes, Human, Pair 18Cloning, MolecularHumansIn Situ Hybridization, FluorescenceMolecular Sequence DataPolymerase Chain ReactionRepetitive Sequences, Nucleic AcidSensitivity and SpecificityDNA Probes

Identifiers

PMID16924124
PMCPMC3958121
OpenAlexW1989245662

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.