Evidence map›Paper›PMID 16923902›Full record

ArticleJournal of bacteriology2006

General mutagenesis of F plasmid TraI reveals its role in conjugative regulation.

Rembrandt J F Haft, Gilberto Palacios, Tran Nguyen, Manuela Mally, Eliora G Gachelet, Ellen L Zechner, Beth Traxler

Abstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rembrandt J F HaftDepartment of Microbiology, University of Washington, Seattle, WA 98195-7242, USA.
Gilberto Palacios
Tran Nguyen
Manuela Mally
Eliora G Gachelet
Ellen L Zechner
Beth Traxler

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
UW: STIPENDS FOR ASPIRING RESEARCHERST35HL007763 · NHLBI · UNIVERSITY OF WASHINGTON · PI GIBALDI, MILO · 1992 to 2002
$271k
Austrian Science Fund FWF P 18607NHLBI NIH HHS 5T35 HL07763NHLBI NIH HHS T35 HL007763NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32 GM07270
6 · The paper itself

Abstract

Bacteria commonly exchange genetic information by the horizontal transfer of conjugative plasmids. In gram-negative conjugation, a relaxase enzyme is absolutely required to prepare plasmid DNA for transit into the recipient via a type IV secretion system. Here we report a mutagenesis of the F plasmid relaxase gene traI using in-frame, 31-codon insertions. Phenotypic analysis of our mutant library revealed that several mutant proteins are functional in conjugation, highlighting regions of TraI that can tolerate insertions of a moderate size. We also demonstrate that wild-type TraI, when overexpressed, plays a dominant-negative regulatory role in conjugation, repressing plasmid transfer frequencies approximately 100-fold. Mutant TraI proteins with insertions in a region of approximately 400 residues between the consensus relaxase and helicase sequences did not cause conjugative repression. These unrestrictive TraI variants have normal relaxase activity in vivo, and several have wild-type conjugative functions when expressed at normal levels. We postulate that TraI negatively regulates conjugation by interacting with and sequestering some component of the conjugative apparatus. Our data indicate that the domain responsible for conjugative repression resides in the central region of TraI between the protein's catalytic domains.

Indexed as

Conjugation, GeneticDNA HelicasesDown-RegulationEscherichia coliEscherichia coli ProteinsF FactorMutagenesisDNA HelicasesEscherichia coli ProteinsTraI protein, E coli

Identifiers

PMID16923902
PMCPMC1595373

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.