Evidence map›Paper›PMID 16922510›Full record

ArticleBiochemistry2006

Analysis of substrate-binding elements in OxlT, the oxalate:formate antiporter of Oxalobacter formigenes.

Xicheng Wang, Rafiquel I Sarker, Peter C Maloney

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Xicheng WangDepartment of Physiology, Johns Hopkins Medical School, Baltimore, Maryland 21205, USA.
Rafiquel I Sarker
Peter C Maloney
Johns Hopkins University · US

Funding

ION GRADIENTS AND ENERGY COUPLING IN BACTERIAR01GM024195 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI MALONEY, PETER C · 1985 to 2012
$4.5M
Ion Gradients and Energy Coupling in BacteriaR56GM024195 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI MALONEY, PETER C · 2007 to 2007
$515k
NIGMS NIH HHS GM24195NIGMS NIH HHS R01 GM024195NIGMS NIH HHS R56 GM024195
6 · The paper itself

Abstract

An OxlT homology model suggests R272 and K355 in transmembrane helices 8 and 11, respectively, are critical to OxlT-mediated transport. We offer positive evidence supporting this idea by studying OxlT function after cysteine residues were separately introduced at these positions. Without further treatment, both mutant proteins had a null phenotype when they were reconstituted into proteoliposomes. By contrast, significant recovery of function occurred when proteoliposomes were treated with MTSEA (methanethiosulfonate ethylamine), a thiol-specific reagent that implants a positively charged amino group. In each case, there was a 2-fold increase in the Michaelis constant (K(M)) for oxalate self-exchange (from 80 to 160 microM), along with a 5-fold (K355C) or 100-fold (R272C) reduction in V(max) compared to that of the cysteine-less parental protein. Analysis by MALDI-TOF confirmed that MTSEA introduced the desired modification. We also examined substrate selectivity for the treated derivatives. While oxalate remained the preferred substrate, there was a shift in preference among other substrates so that the normal rank order (oxalate > malonate > formate) was altered to favor smaller substrates (oxalate > formate > malonate). This shift is consistent with the idea that the substrate-binding site is reduced in size via introduction of the SCH(2)CH(2)NH(3)(+) adduct, which generates a side chain that is approximately 1.85 A longer than that of lysine or arginine. These findings lead us to conclude that R272 and K355 are essential components of the OxlT substrate-binding site.

Indexed as

AntiportersBacterial ProteinsBiological TransportFormatesOxalatesOxalobacter formigenesProteolipidsStructural Homology, ProteinAntiportersBacterial ProteinsFormatesformic acidOxalatesProteolipidsproteoliposomes

Identifiers

PMID16922510
PMCPMC2443686
OpenAlexW2069737206

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.