Evidence map›Paper›PMID 16920149›Full record

ArticleJournal of molecular biology2006

B29 gene silencing in pituitary cells is regulated by its 3' enhancer.

Cindy S Malone, Ali I Kuraishy, Francesca M Fike, Ruchika G Loya, Minil R Mikkili, Michael A Teitell, Randolph Wall

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Cindy S MaloneDepartment of Biology, California State University Northridge, Northridge, CA 91330, USA. cmalone@csun.edu
Ali I Kuraishy
Francesca M Fike
Ruchika G Loya
Minil R Mikkili
Michael A Teitell
Randolph Wall
University of California, Los Angeles · USCalifornia State University, Northridge · US

Funding

TCL1 ONCOGENE IN B LYMPHOCYTE DEVELOPMENT AND NEOPLASIAR01CA090571 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TEITELL, MICHAEL A · 2002 to 2015
$3.8M
CONTROL OF LYMPHOCYTE DEVELOPMENTR01GM040185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WALL, RANDOLPH · 1988 to 2005
$1.7M
A NOVEL MECHANISM OF TCL1 TUMORIGENESISR01CA107300 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TEITELL, MICHAEL A · 2004 to 2008
$1.4M
NOVEL MECHANISMS IN B CELL LEUKEMOGENESISR01CA085841 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WALL, RANDOLPH · 2001 to 2005
$1.3M
NCI NIH HHS CA107300NCI NIH HHS CA85841NCI NIH HHS CA90571NCI NIH HHS R01 CA085841NCI NIH HHS R01 CA090571NCI NIH HHS R01 CA107300NIGMS NIH HHS GM40185NIGMS NIH HHS R01 GM040185
6 · The paper itself

Abstract

B cell-specific B29 (Igbeta, CD79b) genes in rat, mouse, and human are situated between the 5' growth hormone (GH) locus control region and the 3' GH gene cluster. The entire GH genomic region is DNase 1 hypersensitive in GH-expressing pituitary cells, which predicts an "open" chromatin configuration, and yet B29 is not expressed. The B29 promoter and enhancers exhibit histone deacetylation in pituitary cells, but histone deacetylase inhibition failed to activate B29 expression. The B29 promoter and a 3' enhancer showed local dense DNA methylation in both pituitary and non-lymphoid cells consistent with gene silencing. However, DNA methyltransferase inhibition did not activate B29 expression either. B29 promoter constructs were minimally activated in transfected pituitary cells. Co-transfection of the B cell-specific octamer transcriptional co-activator Bob1 with the B29 promoter construct resulted in high level promoter activity in pituitary cells comparable to B29 promoter activity in transfected B cells. Unexpectedly, inclusion of the B29 3' enhancer in B29 promoter constructs strongly inhibited B29 transcriptional activity even when pituitary cells were co-transfected with Bob1. Both Oct-1 and Pit-1 bind the B29 3' enhancer in in vitro electrophoretic mobility shift assay and in in vivo chromatin immunoprecipitation analyses. These data indicate that the GH locus-embedded, tissue-specific B29 gene is silenced in GH-expressing pituitary cells by epigenetic mechanisms, the lack of a B cell-specific transcription factor, and likely by the B29 3' enhancer acting as a powerful silencer in a context and tissue-specific manner.

Indexed as

Enhancer Elements, GeneticGene Expression RegulationGene SilencingAnimalsAzacitidineCD79 AntigensCell LineEnzyme InhibitorsHistone Deacetylase InhibitorsHumansHydroxamic AcidsImmunologic FactorsMiceOctamer Transcription Factor-1Pituitary GlandPromoter Regions, GeneticAzacitidineCD79 AntigensEnzyme InhibitorsHistone Deacetylase InhibitorsHydroxamic AcidsImmunologic FactorsOctamer Transcription Factor-1POU2AF1 protein, humanTrans-ActivatorsTranscription Factor Pit-1trichostatin A

Identifiers

PMID16920149
PMCPMC2104784
OpenAlexW2083609595

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.