Evidence map›Paper›PMID 16916450›Full record

ArticleBMC immunology2006

Profiling helper T cell subset gene expression in deer mice.

Lauren Oko, Bethany Aduddell-Swope, Derall Willis, Robyn Hamor, Teresa A Coons, Brian Hjelle, Tony Schountz

Open access · goldAbstract read
In one paragraph

Article in BMC immunology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
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  5. Review
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  9. Article
  10. Regulatory T cell-like responses in deer mice persistently infected with Sin Nombre virus.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Lauren OkoSchool of Biological Sciences, University of Northern Colorado, 1556 Ross Hall, Greeley, CO 80639, USA. lauren_oko@hotmail.com
Bethany Aduddell-Swope
Derall Willis
Robyn Hamor
Teresa A Coons
Brian Hjelle
Tony Schountz
University of Northern Colorado · USColorado Mesa University · USUniversity of New Mexico · US

Funding

Virology/Immunology CoreU19AI045452 · NIAID · UNIVERSITY OF NEW MEXICO · PI HJELLE, BRIAN L. · 1999 to 2009
$8.7M
Development of Rapid Diagnostic Tests for HantavirusesU01AI054779 · NIAID · NOVARTIS VACCINES AND DIAGNOSTICS, INC. · PI PICHUANTES, SERGIO · 2003 to 2007
$4.6M
Cell Entry Inhibitors for Sin Nombre VirusU01AI056618 · NIAID · UNIVERSITY OF NEW MEXICO · PI HJELLE, BRIAN L. · 2003 to 2007
$1.1M
Deer Mice as Tools for Infectious Disease ResearchR15AI054461 · NIAID · UNIVERSITY OF NORTHERN COLORADO · PI HAWKINSON, ANN · 2006 to 2013
$598k
U.S. Based Collaboration in Emerging Viral and Prion Diseases-26625489N01AI025489 · NIAID · University of Texas Medical Branch · 2004 to 2004
–
NIAID NIH HHS 1U01 AI054779-0NIAID NIH HHS 2 U19 AI45452NIAID NIH HHS AI054461NIAID NIH HHS N01 AI025489NIAID NIH HHS R15 AI054461NIAID NIH HHS R56 AI034448NIAID NIH HHS U01 AI054779NIAID NIH HHS U01 AI056618NIAID NIH HHS U01 AI 56618-01NIAID NIH HHS U19 AI045452
6 · The paper itself

Abstract

backgroundDeer mice (Peromyscus maniculatus) are the most common mammals in North America and are reservoirs for several zoonotic agents, including Sin Nombre virus (SNV), the principal etiologic agent of hantavirus cardiopulmonary syndrome (HCPS) in North America. Unlike human HCPS patients, SNV-infected deer mice show no overt pathological symptoms, despite the presence of virus in the lungs. A neutralizing IgG antibody response occurs, but the virus establishes a persistent infection. Limitations of detailed analysis of deer mouse immune responses to SNV are the lack of reagents and methods for evaluating such responses.

resultsWe developed real-time PCR-based detection assays for several immune-related transcription factor and cytokine genes from deer mice that permit the profiling of CD4+ helper T cells, including markers of Th1 cells (T-bet, STAT4, IFNgamma, TNF, LT), Th2 cells (GATA-3, STAT6, IL-4, IL-5) and regulatory T cells (Fox-p3, IL-10, TGFbeta1). These assays compare the expression of in vitro antigen-stimulated and unstimulated T cells from individual deer mice.

conclusionWe developed molecular methods for profiling immune gene expression in deer mice, including a multiplexed real-time PCR assay for assessing expression of several cytokine and transcription factor genes. These assays should be useful for characterizing the immune responses of experimentally- and naturally-infected deer mice.

Indexed as

Gene Expression ProfilingAnimalsCell ProliferationCells, CulturedCell SeparationCytokinesPeromyscusTh1 CellsTh2 CellsT-Lymphocyte SubsetsTranscription FactorsCytokinesTranscription Factors

Identifiers

PMID16916450
PMCPMC1559719
OpenAlexW1540371768

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.