Evidence map›Paper›PMID 16914741›Full record

ArticleMolecular and cellular biology2006

FBPs are calibrated molecular tools to adjust gene expression.

Hye-Jung Chung, Juhong Liu, Miroslav Dundr, Zuqin Nie, Suzanne Sanford, David Levens

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Article
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  8. Developmental Roles of FUSE Binding Protein 1 (International journal of molecular sciences · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. β-Actin mRNA interactome mapping by proximity biotinylation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Hye-Jung ChungLaboratory of Pathology, CCR, NCI, Bldg. 10, Rm. 2N106, Bethesda, MD 20892-1500, USA.
Juhong Liu
Miroslav Dundr
Zuqin Nie
Suzanne Sanford
David Levens
Rosalind Franklin University of Medicine and Science · US

Funding

Mechanisms of transcription factor integration at the c-myc promoterZIASC009144 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI LEVENS, DAVID L. · 2009 to 2025
$9.5M
Mechanisms of transcription factor integration at the c-myc promoterZ01SC009144 · SC · DIVISION OF CLINICAL SCIENCES - NCI · PI LEVENS, DAVID L. · 1996 to 2008
$3.1M
Intramural NIH HHS
6 · The paper itself

Abstract

The three far-upstream element (FUSE) binding protein (FBP) family members have been ascribed different functions in gene regulation. They were therefore examined with various biochemical, molecular biological, and cell biological tests to evaluate whether their sequence differences reflect functional customization or neutral changes at unselected residues. Each FBP displayed a characteristic profile of intrinsic transcription activation and repression, binding with protein partners, and subcellular trafficking. Although some differences, such as weakened FBP3 nuclear localization, were predictable from primary sequence differences, the unexpected failure of FBP3 to bind the FBP-interacting repressor (FIR) was traced to seemingly conservative substitutions within a small patch of an N-terminal alpha-helix. The transactivation strength and the FIR-binding strength of the FBPs were in the opposite order. Despite their distinguishing features and differential activities, the FBPs traffic to shared subnuclear sites and regulate many common target genes, including c-myc. Though a variety of functions have been attributed to the FBPs, based upon their panel of shared and unique features, we propose that they constitute a molecular regulatory kit that tunes the expression of shared targets through a common mechanism.

Indexed as

Gene ExpressionAmino Acid SequenceDNADNA-Binding ProteinsDNA HelicasesHeLa CellsHumansHydrophobic and Hydrophilic InteractionsMolecular Sequence DataProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryProto-Oncogene Proteins c-mycRepressor ProteinsRNA-Binding ProteinsRNA Splicing FactorsDNADNA-Binding ProteinsDNA HelicasesFUBP1 protein, humanFUBP3 protein, humanKHSRP protein, humanpoly-U binding splicing factor 60KDaProto-Oncogene Proteins c-mycRepressor ProteinsRNA-Binding ProteinsRNA Splicing FactorsTrans-ActivatorsTranscription Factors

Identifiers

PMID16914741
PMCPMC1592819
OpenAlexW1974580999

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.