Evidence map›Paper›PMID 16914453›Full record

ArticleNucleic acids research2006

Transcriptional potential of the gamma-globin gene is dependent on the CACCC box in a developmental stage-specific manner.

Qiliang Li, Xiangdong Fang, Ivan Olave, Hemei Han, Man Yu, Ping Xiang, George Stamatoyannopoulos

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Qiliang LiDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195, USA. li111640@u.washington.edu
Xiangdong Fang
Ivan Olave
Hemei Han
Man Yu
Ping Xiang
George Stamatoyannopoulos
University of Washington · USUniversity of Washington Medical Center · US

Funding

MOLECULAR CONTROL OF GLOBIN GENE SWITCHINGR37DK045365 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 1998 to 2006
$3.8M
Molecular Mechanism of Human g-Globin Gene SilencingR01HL073439 · NHLBI · UNIVERSITY OF WASHINGTON · PI LI, QILIANG · 2003 to 2011
$2.8M
MOLECULAR CONTROL OF HUMAN GLOBIN GENE SWITCHINGR01DK045365 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 1992 to 2011
$1.6M
Mechanism of Gamma-Globin Gene Activation in the AdultR01DK061805 · NIDDK · UNIVERSITY OF WASHINGTON · PI LI, QILIANG · 2001 to 2004
$1.5M
Globin Gene Switching: Molecular ControlR56DK045365 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 2007 to 2007
$78k
NHLBI NIH HHS HL73439NHLBI NIH HHS R01 HL073439NIDDK NIH HHS DK45365NIDDK NIH HHS DK61805NIDDK NIH HHS R01 DK045365NIDDK NIH HHS R01 DK061805NIDDK NIH HHS R37 DK045365NIDDK NIH HHS R56 DK045365
6 · The paper itself

Abstract

To test the role of CACCC box on gamma-globin gene activation, the CACCC box was deleted or mutated and gamma-gene expression was monitored in transgenic mice. Disruption of the CACCC box had no effect on gamma-gene expression in the cells of embryonic erythropoiesis but it strikingly reduced gamma-gene expression in fetal erythropoiesis, and abolished gamma-gene expression in adult erythroid cells. The CACCC mutation diminished HS formation, as well as TBP and polII recruitment at the gamma-gene promoter; however, it only resulted in slight or no effects on histone H3 and H4 acetylation in adult erythropoiesis. Our findings indicate that each basic cis element of the proximal gamma-gene promoter, i.e. CACCC, CCAAT or TATA box, can be disrupted without affecting the activation of gamma gene in embryonic erythroid cells. We propose that the trans factors recruited by the three boxes interact with each other to form a 'promoter complex'. In embryonic erythropoiesis the locus control region enhancer is able to interact with the complex even when components normally binding to one of the motifs are missing, but it can only activate an intact 'promoter complex' in adult erythroid cells.

Indexed as

Gene Expression Regulation, DevelopmentalResponse ElementsTranscriptional ActivationAnimalsBinding SitesChromatinDNA Polymerase IIErythrocytesErythroid CellsErythropoiesisGlobinsHumansMiceMice, TransgenicMutationPromoter Regions, GeneticChromatinDNA Polymerase IIGlobinsTATA-Box Binding Protein

Identifiers

PMID16914453
PMCPMC1557803
OpenAlexW2022326350

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.