Evidence map›Paper›PMID 16914444›Full record

ArticleNucleic acids research2006

Protein-protein interaction analysis by C-terminally specific fluorescence labeling and fluorescence cross-correlation spectroscopy.

Rieko Oyama, Hideaki Takashima, Masato Yonezawa, Nobuhide Doi, Etsuko Miyamoto-Sato, Masataka Kinjo, Hiroshi Yanagawa

Abstract readEvaluation Study
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Fluorescence cross-correlation spectroscopy using single wavelength laser.Frontiers of chemistry in China : selected publications from Chinese universities · 2009
    Article
  12. A bacterial two-hybrid system based on the twin-arginine transporter pathway of E. coli.Protein science : a publication of the Protein Society · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rieko OyamaDepartment of Biosciences and Informatics, Keio University, Yokohama 223-8522, Japan.
Hideaki Takashima
Masato Yonezawa
Nobuhide Doi
Etsuko Miyamoto-Sato
Masataka Kinjo
Hiroshi Yanagawa

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here, we describe novel puromycin derivatives conjugated with iminobiotin and a fluorescent dye that can be linked covalently to the C-terminus of full-length proteins during cell-free translation. The iminobiotin-labeled proteins can be highly purified by affinity purification with streptavidin beads. We confirmed that the purified fluorescence-labeled proteins are useful for quantitative protein-protein interaction analysis based on fluorescence cross-correlation spectroscopy (FCCS). The apparent dissociation constants of model protein pairs such as proto-oncogenes c-Fos/c-Jun and archetypes of the family of Ca2+-modulated calmodulin/related binding proteins were in accordance with the reported values. Further, detailed analysis of the interactions of the components of polycomb group complex, Bmi1, M33, Ring1A and RYBP, was successfully conducted by means of interaction assay for all combinatorial pairs. The results indicate that FCCS analysis with puromycin-based labeling and purification of proteins is effective and convenient for in vitro protein-protein interaction assay, and the method should contribute to a better understanding of protein functions by using the resource of available nucleotide sequences.

Indexed as

CalmodulinChromatography, AffinityFluorescent DyesIntracellular Calcium-Sensing ProteinsPolycomb-Group ProteinsProtein BiosynthesisProtein Interaction MappingProto-Oncogene Proteins c-fosProto-Oncogene Proteins c-junPuromycinRepressor ProteinsSpectrometry, FluorescenceCalmodulinFluorescent DyesIntracellular Calcium-Sensing ProteinsPolycomb-Group ProteinsProto-Oncogene Proteins c-fosProto-Oncogene Proteins c-junPuromycinRepressor Proteins

Identifiers

PMID16914444
PMCPMC1904107

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.