Evidence map›Paper›PMID 16912320›Full record

ArticleJournal of virology2006

Molecularly cloned SHIV-1157ipd3N4: a highly replication- competent, mucosally transmissible R5 simian-human immunodeficiency virus encoding HIV clade C Env.

R J Song, A-L Chenine, R A Rasmussen, C R Ruprecht, S Mirshahidi, R D Grisson, W Xu, J B Whitney, L M Goins, H Ong and 12 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 150 citations in OpenAlex.

  1. Trial
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  7. EfficientFrontiers in immunology · 2023
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48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 2 countries.

R J SongDana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.
A-L Chenine
R A Rasmussen
C R Ruprecht
S Mirshahidi
R D Grisson
W Xu
J B Whitney
L M Goins
H Ong
P-L Li
E Shai-Kobiler
T Wang
C M McCann
H Zhang
C Wood
C Kankasa
W E Secor
H M McClure
E Strobert
J G Else
R M Ruprecht
Dana-Farber Cancer Institute · USHarvard University · USEmory University · USUniversity of Nebraska–Lincoln · USCenters for Disease Control and Prevention · USUniversity Teaching Hospital · ZM

Funding

YNPRC NHP CLINICAL MEDICINE RESIDENCY PROGRAM - SUPPLEMENTP51RR000165 · NCRR · EMORY UNIVERSITY · PI ALTMAN, JOHN DAVID · 1985 to 2011
$114.0M
Virology and ImmunologyP01AI048240 · NIAID · UNIVERSITY OF WASHINGTON · PI RUPRECHT, RUTH MARGRIT · 2000 to 2020
$46.7M
VIRAL SHUTOFF OF HOST TRANSCRIPTION--PBCV-1 INFECTEDP20RR015635 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2000 to 2009
$22.1M
Infant Immunoprophylaxis against a Primate LentivirusR37AI034266 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI RUPRECHT, RUTH MARGRIT · 2003 to 2012
$7.7M
Evolution of Clade C HIV-1 in Infected ChildrenR01HD039620 · NICHD · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2001 to 2005
$1.6M
MECHANISMS OF ORAL SIV TRANSMISSIONR01DE012937 · NIDCR · DANA-FARBER CANCER INSTITUTE · PI RUPRECHT, RUTH MARGRIT · 1999 to 2003
$1.5M
NCRR NIH HHS P20 RR015635NCRR NIH HHS P51 RR000165NCRR NIH HHS RR00165NCRR NIH HHS RR15635NIAID NIH HHS P01 AI048240NIAID NIH HHS P01 AI48240NIAID NIH HHS R37 AI034266NIAID NIH HHS R37 AI34266NICHD NIH HHS HD39620NICHD NIH HHS R01 HD039620NIDCR NIH HHS R01 DE012937NIDCR NIH HHS R01 DE0160354NIDCR NIH HHS R01 DE12937
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1) clade C causes >50% of all HIV infections worldwide, and an estimated 90% of all transmissions occur mucosally with R5 strains. A pathogenic R5 simian-human immunodeficiency virus (SHIV) encoding HIV clade C env is highly desirable to evaluate candidate AIDS vaccines in nonhuman primates. To this end, we generated SHIV-1157i, a molecular clone from a Zambian infant isolate that carries HIV clade C env. SHIV-1157i was adapted by serial passage in five monkeys, three of which developed peripheral CD4(+) T-cell depletion. After the first inoculated monkey developed AIDS at week 137 postinoculation, transfer of its infected blood to a naïve animal induced memory T-cell depletion and thrombocytopenia within 3 months in the recipient. In parallel, genomic DNA from the blood donor was amplified to generate the late proviral clone SHIV-1157ipd3. To increase the replicative capacity of SHIV-1157ipd3, an extra NF-kappaB binding site was engineered into its 3' long terminal repeat, giving rise to SHIV-1157ipd3N4. This virus was exclusively R5 tropic and replicated more potently in rhesus peripheral blood mononuclear cells than SHIV-1157ipd3 in the presence of tumor necrosis factor alpha. Rhesus macaques of Indian and Chinese origin were next inoculated intrarectally with SHIV-1157ipd3N4; this virus replicated vigorously in both sets of monkeys. We conclude that SHIV-1157ipd3N4 is a highly replication-competent, mucosally transmissible R5 SHIV that represents a valuable tool to test candidate AIDS vaccines targeting HIV-1 clade C Env.

Indexed as

Administration, RectalAmino Acid SequenceAnimalsChimeraCloning, MolecularGene Products, envHIV-1HIV InfectionsHumansInfantMacaca mulattaMolecular Sequence DataReceptors, ChemokineReceptors, CXCR5Receptors, CytokineSimian Acquired Immunodeficiency SyndromeCXCR5 protein, humanGene Products, envReceptors, ChemokineReceptors, CXCR5Receptors, Cytokine

Identifiers

PMID16912320
PMCPMC1563858
OpenAlexW2107095207

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.