Evidence map›Paper›PMID 16912287›Full record

ArticleJournal of virology2006

West Nile virus 5'-cap structure is formed by sequential guanine N-7 and ribose 2'-O methylations by nonstructural protein 5.

Debashish Ray, Aaloki Shah, Mark Tilgner, Yi Guo, Yiwei Zhao, Hongping Dong, Tia S Deas, Yangsheng Zhou, Hongmin Li, Pei-Yong Shi

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 226 papers.

0numbers the graph read from it
0cells of the map it votes in
226citing papers in PubMed
18.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

226 citing papers in PubMed, 379 citations in OpenAlex.

  1. Article
  2. Review
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  6. Review
  7. Mechanistic insights into dengue virus inhibition by a clinical trial compound NITD-688.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. West Nile virus unmasked: from gene variability to future challenges.Frontiers in cellular and infection microbiology · 2025
    Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review

166 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Debashish RayWadsworth Center, New York State Department of Health, Albany, 12201, USA.
Aaloki Shah
Mark Tilgner
Yi Guo
Yiwei Zhao
Hongping Dong
Tia S Deas
Yangsheng Zhou
Hongmin Li
Pei-Yong Shi
New York State Department of Health · USUniversity at Albany, State University of New York · USWadsworth Center · US

Funding

Identifying inhibitors of West Nile and dengue virusesU01AI061193 · NIAID · WADSWORTH CENTER · PI KRAMER, LAURA D · 2004 to 2008
$1.6M
West Nile Virus Life Cycle in Flavivirus-Resistant CellsR21AI065562 · NIAID · WADSWORTH CENTER · PI SHI, PEI-YONG · 2005 to 2006
$400k
US BASED COLLABORATION IN EMERGING VIRAL AND PRION DISEASES-266025490N01AI025490 · NIAID · HEALTH RESEARCH, INC. · 2003 to 2004
–
NIAID NIH HHS AI061193NIAID NIH HHS AI065562NIAID NIH HHS AI25490NIAID NIH HHS N01 AI025490NIAID NIH HHS R21 AI065562NIAID NIH HHS U01 AI061193
6 · The paper itself

Abstract

Many flaviviruses are globally important human pathogens. Their plus-strand RNA genome contains a 5'-cap structure that is methylated at the guanine N-7 and the ribose 2'-OH positions of the first transcribed nucleotide, adenine (m(7)GpppAm). Using West Nile virus (WNV), we demonstrate, for the first time, that the nonstructural protein 5 (NS5) mediates both guanine N-7 and ribose 2'-O methylations and therefore is essential for flavivirus 5'-cap formation. We show that a recombinant full-length and a truncated NS5 protein containing the methyltransferase (MTase) domain methylates GpppA-capped and m(7)GpppA-capped RNAs to m(7)GpppAm-RNA, using S-adenosylmethionine as a methyl donor. Furthermore, methylation of GpppA-capped RNA sequentially yielded m(7)GpppA- and m(7)GpppAm-RNA products, indicating that guanine N-7 precedes ribose 2'-O methylation. Mutagenesis of a K(61)-D(146)-K(182)-E(218) tetrad conserved in other cellular and viral MTases suggests that NS5 requires distinct amino acids for its N-7 and 2'-O MTase activities. The entire K(61)-D(146)-K(182)-E(218) motif is essential for 2'-O MTase activity, whereas N-7 MTase activity requires only D(146). The other three amino acids facilitate, but are not essential for, guanine N-7 methylation. Amino acid substitutions within the K(61)-D(146)-K(182)-E(218) motif in a WNV luciferase-reporting replicon significantly reduced or abolished viral replication in cells. Additionally, the mutant MTase-mediated replication defect could not be trans complemented by a wild-type replicase complex. These findings demonstrate a critical role for the flavivirus MTase in viral reproduction and underscore this domain as a potential target for antiviral therapy.

Indexed as

5' Untranslated RegionsAnimalsCell LineCricetinaeGenome, ViralMethylationMethyltransferasesRiboseRNA CapsViral Nonstructural ProteinsVirus ReplicationWest Nile virus5' Untranslated RegionsMethyltransferasesmRNA (guanine(N7))-methyltransferaseNS5 protein, flavivirusRiboseRNA CapsViral Nonstructural Proteins

Identifiers

PMID16912287
PMCPMC1563844
OpenAlexW2107132989

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.