Evidence map›Paper›PMID 16912286›Full record

ArticleJournal of virology2006

Identification of protective Lassa virus epitopes that are restricted by HLA-A2.

Jason Botten, Jeff Alexander, Valerie Pasquetto, John Sidney, Polly Barrowman, Joey Ting, Bjoern Peters, Scott Southwood, Barbara Stewart, Maria P Rodriguez-Carreno and 4 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 69 citations in OpenAlex.

  1. Robust polyfunctional CD8The Journal of general virology · 2025
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Lassa Virus Countermeasures.Current topics in microbiology and immunology · 2023
    Article
  8. Article
  9. Article
  10. Identification of Common CD8Journal of virology · 2020
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Arenavirus Quasispecies and Their Biological Implications.Current topics in microbiology and immunology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Jason BottenMolecular and Integrative Neurosciences Department, The Scripps Research Institute, La Jolla, CA 92037, USA. jbotten@scripps.edu
Jeff Alexander
Valerie Pasquetto
John Sidney
Polly Barrowman
Joey Ting
Bjoern Peters
Scott Southwood
Barbara Stewart
Maria P Rodriguez-Carreno
Bianca Mothe
J Lindsay Whitton
Alessandro Sette
Michael J Buchmeier
Scripps Research Institute · USLa Jolla Institute for Immunology · USCalifornia State University, San Marcos · US

Funding

Vaccines and Diagnostics TrialsU54AI065359 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2005 to 2013
$88.8M
MOLECULAR BASIS OF VIRAL PATHOGENESIST32AI007354 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI DE LA TORRE, JUAN C. · 1989 to 2020
$5.2M
CYTOTOXIC T-CELL RESPONSES TO VIRUS INFECTIONR01AI027028 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WHITTON, J. LINDSAY · 1989 to 2008
$3.5M
Vaccination for LASSA FEVERR01AI050840 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI BUCHMEIER, MICHAEL JOSEPH · 2002 to 2005
$2.1M
Cytotoxic T Cell Responses to Virus InfectionR56AI027028 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WHITTON, J. LINDSAY · 2012 to 2012
$474k
Dynamics of arenavirus gene expression in vivoF32AI056827 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI BOTTEN, JASON W. · 2003 to 2004
$78k
ANALYSES OF CYTOTOXIC T CELL RESPONSE TO VIRUS INFECTIONR21AI027028 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI WHITTON, J. LINDSAY · 1999 to 1999
–
NIAID NIH HHS AI065359NIAID NIH HHS AI27028NIAID NIH HHS AI50840NIAID NIH HHS F32 AI056827NIAID NIH HHS R01 AI027028NIAID NIH HHS R01 AI050840NIAID NIH HHS R21 AI027028NIAID NIH HHS R56 AI027028NIAID NIH HHS T32 AI007354NIAID NIH HHS T32 AI07354NIAID NIH HHS U54 AI065359
6 · The paper itself

Abstract

Recovery from Lassa virus (LASV) infection usually precedes the appearance of neutralizing antibodies, indicating that cellular immunity plays a primary role in viral clearance. To date, the role of LASV-specific CD8(+) T cells has not been evaluated in humans. To facilitate such studies, we utilized a predictive algorithm to identify candidate HLA-A2 supertype epitopes from the LASV nucleoprotein and glycoprotein precursor (GPC) genes. We identified three peptides (GPC(42-50), GLVGLVTFL; GPC(60-68), SLYKGVYEL; and GPC(441-449), YLISIFLHL) that displayed high-affinity binding (< or =98 nM) to HLA-A*0201, induced CD8(+) T-cell responses of high functional avidity in HLA-A*0201 transgenic mice, and were naturally processed from native LASV GPC in human HLA-A*0201-positive target cells. HLA-A*0201 mice immunized with either GPC(42-50) or GPC(60-68) were protected against challenge with a recombinant vaccinia virus that expressed LASV GPC. The epitopes identified in this study represent potential diagnostic reagents and candidates for inclusion in epitope-based vaccine constructs. Our approach is applicable to any pathogen with existing sequence data, does not require manipulation of the actual pathogen or access to immune human donors, and should therefore be generally applicable to category A through C agents and other emerging pathogens.

Indexed as

Epitope MappingAmino Acid SequenceAnimalsCD8-Positive T-LymphocytesEpitopes, T-LymphocyteHLA-A2 AntigenHumansImmunizationLassa FeverLassa virusMiceMice, TransgenicMolecular Sequence DataNucleocapsid ProteinsPeptidesViral Envelope ProteinsEpitopes, T-LymphocyteHLA-A2 AntigenNucleocapsid ProteinsPeptidesViral Envelope ProteinsViral Vaccines

Identifiers

PMID16912286
PMCPMC1563871
OpenAlexW2166213347

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.