Evidence map›Paper›PMID 16908835›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing.

D A Schneider, S L French, Y N Osheim, A O Bailey, L Vu, J Dodd, J R Yates, A L Beyer, M Nomura

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 115 citations in OpenAlex.

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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

D A SchneiderDepartment of Biological Chemistry, University of California, Irvine, CA 92697-1700, USA.
S L French
Y N Osheim
A O Bailey
L Vu
J Dodd
J R Yates
A L Beyer
M Nomura
University of California, Irvine · USUniversity of Virginia Health System · USScripps Research Institute · US

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI DAVIS, TRACY · 1996 to 2011
$24.7M
GENETICS AND BIOCHEMISTRY OF RIBOSOME SYNTHESISR01GM035949 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI NOMURA, MASAYASU · 1985 to 2009
$7.3M
Visualizing Genetic Activity in Normal & Mutant YeastR01GM063952 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI BEYER, ANN L. · 2001 to 2013
$3.7M
GENETICS AND BIOCHEMISTRY OF RIBOSOME SYNTHESISR37GM035949 · NIGMS · UNIVERSITY OF CALIFORNIA IRVINE · PI NOMURA, MASAYASU · 1988 to 1997
–
NCRR NIH HHS P41 RR011823NCRR NIH HHS RR11823-09NIGMS NIH HHS GM-35949NIGMS NIH HHS GM-63952NIGMS NIH HHS R01 GM035949NIGMS NIH HHS R01 GM063952
6 · The paper itself

Abstract

Previous investigations into the mechanisms that control RNA Polymerase (Pol) I transcription have primarily focused on the process of transcription initiation, thus little is known regarding postinitiation steps in the transcription cycle. Spt4p and Spt5p are conserved throughout eukaryotes, and they affect elongation by Pol II. We have found that these two proteins copurify with Pol I and associate with the rDNA in vivo. Disruption of the gene for Spt4p resulted in a modest decrease in growth and rRNA synthesis rates at the permissive temperature, 30 degrees C. Furthermore, biochemical and EM analyses showed clear defects in rRNA processing. These data suggest that Spt4p, Spt5p, and, potentially, other regulators of Pol I transcription elongation play important roles in coupling rRNA transcription to its processing and ribosome assembly.

Indexed as

RNA Processing, Post-TranscriptionalTranscription, GeneticChromosomal Proteins, Non-HistoneGene DeletionMicroscopy, ElectronMutationNuclear ProteinsProtein BindingRNA Polymerase IRNA Polymerase IIRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional Elongation FactorsChromosomal Proteins, Non-HistoneNuclear ProteinsRNA Polymerase IRNA Polymerase IIRNA, RibosomalSaccharomyces cerevisiae ProteinsSPT4 protein, S cerevisiaeSPT5 transcriptional elongation factorTranscriptional Elongation Factors

Identifiers

PMID16908835
PMCPMC1568913
OpenAlexW2056765374

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.