Evidence map›Paper›PMID 16903901›Full record

ArticleImmunology2006

Onset of promiscuous gene expression in murine fetal thymus organ culture.

Renato Sousa Cardoso, Danielle A R Magalhães, Ana Maria T Baião, Cristina Moraes Junta, Claudia Macedo, Márcia M C Marques, Elza Tiemi Sakamoto-Hojo, Eduardo A Donadi, Geraldo A S Passos

Open access · greenAbstract read
In one paragraph

Article in Immunology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Thymic epithelial cell heterogeneity: TEC by TEC.Nature reviews. Immunology · 2020
    Review
  3. Twenty Years of AIRE.Frontiers in immunology · 2018
    Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Induction of immune tolerance to a therapeutic protein by intrathymic gene delivery.Molecular therapy : the journal of the American Society of Gene Therapy · 2010
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Renato Sousa CardosoMolecular Immunogenetics Group, Department of Genetics, Faculty of Medicine, University of Sao Paulo, Sao Paulo, Brazil.
Danielle A R Magalhães
Ana Maria T Baião
Cristina Moraes Junta
Claudia Macedo
Márcia M C Marques
Elza Tiemi Sakamoto-Hojo
Eduardo A Donadi
Geraldo A S Passos
Immungenetics (Germany) · DEUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

T-cell differentiation and induction of tolerance to self-antigens occurs mainly in the thymus. Thymic stromal cells, specifically medullary thymic epithelial cells, express a diverse set of genes encoding parenchymal organ-specific proteins. This phenomenon has been termed promiscuous gene expression (PGE) and has been implicated in preventing organ-specific autoimmunity by inducing T-cell tolerance to self antigens. Early thymopoiesis and the critical factors involved in T-cell differentiation can be reproduced in vitro by murine fetal thymus organ culture (FTOC), which mimics the natural thymic microenvironment. To evaluate the occurrence of PGE in FTOC, gene expression profiling during in vitro thymic development in BALB/c mice was performed using a set of nylon cDNA microarrays containing 9216 sequences. The statistical analysis of the microarray data (sam program) revealed the temporal repression and induction of 57 parenchymal and seven lymphoid organ-specific genes. Most of the genes analysed are repressed during early thymic development (15-17 days post-coitum). The expression of the autoimmune regulator (AIRE) gene at 16 days post-coitum marks the onset of PGE. This precedes the induction of parenchymal organ genes during the late developmental phase at 20 days post-coitum. The mechanism of T-cell tolerance induction begins during fetal development and continues into adulthood. Our findings are significant because they show a fine demarcation of PGE onset, which plays a central role in induction of T-cell tolerance.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell DifferentiationChromosome MappingFetal DevelopmentGene Expression ProfilingMiceMice, Inbred BALB COligonucleotide Array Sequence AnalysisOrgan Culture TechniquesReverse Transcriptase Polymerase Chain ReactionSelf ToleranceThymus Gland

Identifiers

PMID16903901
PMCPMC1819582
OpenAlexW2112114630

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.