Evidence map›Paper›PMID 16902086›Full record

ArticleGenome research2006

Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii.

Asis Khan, Ulrike Böhme, Krystyna A Kelly, Ellen Adlem, Karen Brooks, Mark Simmonds, Karen Mungall, Michael A Quail, Claire Arrowsmith, Tracey Chillingworth and 29 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 122 citations in OpenAlex.

  1. Article
  2. Article
  3. Global selective sweep of a highly inbred genome of the cattle parasiteProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  4. Article
  5. Clinical microbiology reviews · 2017
    Review
  6. Article
  7. Article
  8. Article
  9. Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  10. Article
  11. Article
  12. Virulence differences in Toxoplasma mediated by amplification of a family of polymorphic pseudokinases.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  13. Article
  14. Article
  15. Article
  16. Genetic diversity of Toxoplasma gondii in animals and humans.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Review
  17. Review
  18. Development of forward genetics in Toxoplasma gondii.International journal for parasitology · 2009
    Review
  19. Toxoplasma gondii: 25 years and 25 major advances for the field.International journal for parasitology · 2009
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 7 institutions in 3 countries.

Asis KhanDepartment of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri 63110, USA.
Ulrike Böhme
Krystyna A Kelly
Ellen Adlem
Karen Brooks
Mark Simmonds
Karen Mungall
Michael A Quail
Claire Arrowsmith
Tracey Chillingworth
Carol Churcher
David Harris
Matthew Collins
Nigel Fosker
Audrey Fraser
Zahra Hance
Kay Jagels
Sharon Moule
Lee Murphy
Susan O'Neil
Marie-Adele Rajandream
David Saunders
Kathy Seeger
Sally Whitehead
Thomas Mayr
Xuenan Xuan
Junichi Watanabe
Yutaka Suzuki
Hiroyuki Wakaguri
Sumio Sugano
Chihiro Sugimoto
Ian Paulsen
Aaron J Mackey
David S Roos
Neil Hall
Matthew Berriman
Bart Barrell
L David Sibley
James W Ajioka
Wellcome Sanger Institute · GBThe University of Tokyo · JPUniversity of Cambridge · GBCalifornia University of Pennsylvania · USJ. Craig Venter Institute · USObihiro University of Agriculture and Veterinary Medicine · JPWashington University in St. Louis · US

Funding

Infectivity and Transmission of ToxoplasmosisR01AI059176 · NIAID · WASHINGTON UNIVERSITY · PI SIBLEY, L. DAVID · 2004 to 2013
$3.9M
NIAID NIH HHS R01 AI059176Wellcome Trust
6 · The paper itself

Abstract

Toxoplasma gondii is a globally distributed protozoan parasite that can infect virtually all warm-blooded animals and humans. Despite the existence of a sexual phase in the life cycle, T. gondii has an unusual population structure dominated by three clonal lineages that predominate in North America and Europe, (Types I, II, and III). These lineages were founded by common ancestors approximately10,000 yr ago. The recent origin and widespread distribution of the clonal lineages is attributed to the circumvention of the sexual cycle by a new mode of transmission-asexual transmission between intermediate hosts. Asexual transmission appears to be multigenic and although the specific genes mediating this trait are unknown, it is predicted that all members of the clonal lineages should share the same alleles. Genetic mapping studies suggested that chromosome Ia was unusually monomorphic compared with the rest of the genome. To investigate this further, we sequenced chromosome Ia and chromosome Ib in the Type I strain, RH, and the Type II strain, ME49. Comparative genome analyses of the two chromosomal sequences revealed that the same copy of chromosome Ia was inherited in each lineage, whereas chromosome Ib maintained the same high frequency of between-strain polymorphism as the rest of the genome. Sampling of chromosome Ia sequence in seven additional representative strains from the three clonal lineages supports a monomorphic inheritance, which is unique within the genome. Taken together, our observations implicate a specific combination of alleles on chromosome Ia in the recent origin and widespread success of the clonal lineages of T. gondii.

Indexed as

ChromosomesEvolution, MolecularAnimalsCrosses, GeneticGenetics, PopulationGenetic VariationInheritance PatternsMeiosisMolecular Sequence DataRecombination, GeneticToxoplasma

Identifiers

PMID16902086
PMCPMC1557770
OpenAlexW2116726816

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.