Evidence map›Paper›PMID 16899656›Full record

ArticleGenome research2006

An approximately 140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival.

John C Fyfe, Marilyn Menotti-Raymond, Victor A David, Lars Brichta, Alejandro A Schäffer, Richa Agarwala, William J Murphy, William J Wedemeyer, Brittany L Gregory, Bethany G Buzzell and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Presumptive motor neuron degeneration in an adult cat.The Canadian veterinary journal = La revue veterinaire canadienne · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. DNA mutations of the cat: the good, the bad and the ugly.Journal of feline medicine and surgery · 2015
    Review
  9. Article
  10. Article
  11. Genetic testing in domestic cats.Molecular and cellular probes · 2012
    Review
  12. Article
  13. Article
  14. Article
  15. Feline genetics: clinical applications and genetic testing.Topics in companion animal medicine · 2010
    Review
  16. Article
  17. Article
  18. Drosophila lowfat, a novel modulator of Fat signaling.Development (Cambridge, England) · 2009
    Article
  19. Intravenous administration of self-complementary AAV9 enables transgene delivery to adult motor neurons.Molecular therapy : the journal of the American Society of Gene Therapy · 2009
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 4 countries.

John C FyfeLaboratory of Comparative Medical Genetics, Department of Microbiology & Molecular Genetics, College of Veterinary Medicine, Michigan State University, East Lansing, Michigan 48824, USA. fyfe@cvm.msu.edu
Marilyn Menotti-Raymond
Victor A David
Lars Brichta
Alejandro A Schäffer
Richa Agarwala
William J Murphy
William J Wedemeyer
Brittany L Gregory
Bethany G Buzzell
Meghan C Drummond
Brunhilde Wirth
Stephen J O'Brien
National Institutes of Health · USMichigan State University · USUniversity of Cologne · DEMitchell Institute · US

Funding

The Development of the Domestic Cat, IFelis catusI, as an Animal Model for GenetZ01BC005385 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI O'BRIEN, STEPHEN J · 1996 to 2008
$1.6M
Case Studies In GeneticsZ01LM000097 · NLM · NATIONAL LIBRARY OF MEDICINE · PI SCHAFFER, ALEJANDRO A · 2002 to 2008
$452k
MOLECULAR PATHOGENESIS OF FELINE SPINAL MUSCULAR ATROPHYR03HD039888 · NICHD · MICHIGAN STATE UNIVERSITY · PI FYFE, JOHN C · 2001 to 2002
$149k
NCBI Production Resource DevelopmentZ01LM000160 · NLM · NATIONAL LIBRARY OF MEDICINE · PI OSTELL, JAMES M · 2002 to 2006
–
Intramural NIH HHSNICHD NIH HHS HD39888
6 · The paper itself

Abstract

The leading genetic cause of infant mortality is spinal muscular atrophy (SMA), a clinically and genetically heterogeneous group of disorders. Previously we described a domestic cat model of autosomal recessive, juvenile-onset SMA similar to human SMA type III. Here we report results of a whole-genome scan for linkage in the feline SMA pedigree using recently developed species-specific and comparative mapping resources. We identified a novel SMA gene candidate, LIX1, in an approximately140-kb deletion on feline chromosome A1q in a region of conserved synteny to human chromosome 5q15. Though LIX1 function is unknown, the predicted secondary structure is compatible with a role in RNA metabolism. LIX1 expression is largely restricted to the central nervous system, primarily in spinal motor neurons, thus offering explanation of the tissue restriction of pathology in feline SMA. An exon sequence screen of 25 human SMA cases, not otherwise explicable by mutations at the SMN1 locus, failed to identify comparable LIX1 mutations. Nonetheless, a LIX1-associated etiology in feline SMA implicates a previously undetected mechanism of motor neuron maintenance and mandates consideration of LIX1 as a candidate gene in human SMA when SMN1 mutations are not found.

Indexed as

Gene DeletionAnimalsBase SequenceCatsCell SurvivalChromosome MappingCystinyl AminopeptidaseGenotypeHumansMolecular Sequence DataMotor NeuronsMuscular Atrophy, SpinalNerve Tissue ProteinsPedigreeCystinyl Aminopeptidaseleucyl-cystinyl aminopeptidaseNerve Tissue Proteins

Identifiers

PMID16899656
PMCPMC1557767
OpenAlexW2099339386

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.