Evidence map›Paper›PMID 16897476›Full record

ArticlePlant molecular biology2006

Suppression of gene expression of a recessive SP11/SCR allele by an untranscribed SP11/SCR allele in Brassica self-incompatibility.

Ryo Fujimoto, Tetsu Sugimura, Eigo Fukai, Takeshi Nishio

Abstract read
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In one paragraph

Article in Plant molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 46 citations in OpenAlex.

  1. Characterization of self-incompatibility genes inFrontiers in plant science · 2026
    Article
  2. Article
  3. Characterization of a CommonPlants (Basel, Switzerland) · 2021
    Article
  4. Review
  5. Article
  6. Horticulture research · 2019
    Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Molecular mechanisms of epigenetic variation in plants.International journal of molecular sciences · 2012
    Review
  17. The self-compatibility mechanism in Brassica napus L. is applicable to F1 hybrid breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
  18. Genetic analysis of interspecific incompatibility in Brassica rapa.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Ryo FujimotoGraduate School of Agricultural Science, Tohoku University, 981-8555 Aoba-ku, Sendai, Japan.
Tetsu Sugimura
Eigo Fukai
Takeshi Nishio
Tohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutations in the S locus of a self-compatible cultivar Yellow Sarson in Brassica rapa, which has a self-compatible class-I S haplotype, S-f2, were investigated. S-28 in Brassica oleracea was found to be a member of an interspecific pair with S-f2 in B. rapa. The original S haplotype of S-f2 was identified to be S-54 in B. rapa. Sequence comparison of alleles in S-f2 with those in S-54 and B. oleracea S-28 revealed insertion of a retrotransposon-like sequence in the first intron of SRK and 89-bp deletion in the promoter region of SP11. No transcripts of SRK and SP11 were detected in S-f2 homozygotes, suggesting that the insertion and the deletion in SRK and SP11, respectively, caused the loss of the function of these genes. Promoter assay using transgenic plants indicated that the SP11 promoter of S-f2 has no activity. Heterozygotes of S-f2 and a normal class-II S haplotype, S-60, in B. rapa were found to be self-compatible. Interestingly, transcription of SP11-60 was revealed to be suppressed in the S-f2/S-60 heterozygotes, suggesting that an untranscribed class-I SP11 allele suppresses the expression of a recessive class-II SP11 allele in the anthers of S heterozygotes. Similar phenomenon was observed in heterozygotes of a self-compatible class-I S haplotype and a self-incompatible class-II S haplotype in B. oleracea.

Indexed as

AllelesAmino Acid SequenceArabidopsisBrassica rapaCloning, MolecularFlowersGene Expression Regulation, PlantGenes, PlantGenes, RecessiveHaplotypesHeterozygoteMolecular Sequence DataPlant ProteinsPlants, Genetically ModifiedReproductionTranscription, GeneticPlant ProteinsSP11 protein, Brassica

Identifiers

PMID16897476
OpenAlexW1983108117

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.