Evidence map›Paper›PMID 16897085›Full record

ArticleCurrent genetics2006

Genetic interactions of a putative Arabidopsis thaliana ubiquitin-ligase with components of the Saccharomyces cerevisiae ubiquitination machinery.

Laura Aguilar-Henonin, Jaime Bravo, Plinio Guzmán

Abstract read
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Article in Current genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Laura Aguilar-HenoninDepartamento de Ingeniería Genética de Plantas, Centro de Investigación y de Estudios Avanzados, Campus Guanajuato., Apartado Postal 629, Gto, 36500, Mexico.
Jaime Bravo
Plinio Guzmán
Centro de Investigación en Materiales Avanzados · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The feasibility of using the Saccharomyces cerevisiae genetic tools to get insights into the function of a plant-specific ubiquitin-ligase was examined. ATL2 is a potential ubiquitin-ligase of the RING-H2 type that was originally isolated as a conditionally toxic Arabidopsis cDNA when overexpressed in yeast. ATL2 is a member of an Arabidopsis family that comprises 80 proteins. After testing cDNAs from 25 ATL members for toxicity we found that in addition to ATL2 only ATL63 was toxic, suggesting specific interactions of each one of these two ATLs in yeast. We seek to identify suppressors of the ATL2 toxicity in yeast and we found that toxicity was suppressed by knock-out mutations on different components of the ubiquitination pathway. Suppression was achieved in four deubiquitinating enzyme mutants and in one ubiquitin-conjugating enzyme mutant. A model is proposed in which Ubc4 and ATL2 act together to target for degradation one or more essential yeast proteins, Doa4/Ubp4, Ubp6 and Ubp14 have a role in disassembling ubiquitin chains on the target proteins and Ubp15 protects ATL2 from auto-ubiquitination. We presuppose that our approach can be further utilized to analyze the function of this distinctive class of ubiquitin-ligases in yeast as well as in Arabidopsis.

Indexed as

ArabidopsisArabidopsis ProteinsDNA-Binding ProteinsEndopeptidasesModels, BiologicalMultigene FamilySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSuppression, GeneticUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesUbiquitinsArabidopsis ProteinsATL2 protein, ArabidopsisDNA-Binding ProteinsEndopeptidasesSaccharomyces cerevisiae ProteinsUbc4 protein, S cerevisiaeUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesUbiquitinsUBP6 protein, S cerevisiae

Identifiers

PMID16897085
OpenAlexW2122628059

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.