Evidence map›Paper›PMID 16896222›Full record

ArticleEukaryotic cell2006

Heterologous expression implicates a GATA factor in regulation of nitrogen metabolic genes and ion homeostasis in the halotolerant yeast Debaryomyces hansenii.

Raúl García-Salcedo, Antonio Casamayor, Amparo Ruiz, Asier González, Catarina Prista, Maria C Loureiro-Dias, José Ramos, Joaquín Ariño

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Raúl García-SalcedoDepartamento de Microbiología, Edificio Severo Ochoa, Campus de Rabanales, Universidad de Córdoba, Spain.
Antonio Casamayor
Amparo Ruiz
Asier González
Catarina Prista
Maria C Loureiro-Dias
José Ramos
Joaquín Ariño
Universitat Autònoma de Barcelona · ESUniversity of Córdoba · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The yeast Debaryomyces hansenii has a remarkable capacity to proliferate in salty and alkaline environments such as seawater. A screen for D. hansenii genes able to confer increased tolerance to high pH when overexpressed in Saccharomyces cerevisiae yielded a single gene, named here DhGZF3, encoding a putative negative GATA transcription factor related to S. cerevisiae Dal80 and Gzf3. Overexpression of this gene in wild-type S. cerevisiae increased caffeine and rapamycin tolerance, blocked growth in low glucose concentrations and nonfermentable carbon sources, and resulted in lithium- and sodium-sensitive cells. Sensitivity to salt could be attributed to a reduced cation efflux, most likely because of a decrease in expression of the ENA1 Na(+)-ATPase gene. Overexpression of DhGZF3 did not affect cell growth in a gat1 mutant but was lethal in the absence of Gln3. These are positive factors that oppose both Gzf3 and Dal80. Genome-wide transcriptional profiling of wild-type cells overexpressing DhGZF3 shows decreased expression of a number of genes that are usually induced in poor nitrogen sources. In addition, the entire pathway leading to Lys biosynthesis was repressed, probably as a result of a decrease in the expression of the specific Lys14 transcription factor. In conclusion, our results demonstrate that DhGzf3 can play a role as a negative GATA transcription factor when expressed in S. cerevisiae and that it most probably represents the only member of this family in D. hansenii. These findings also point to the GATA transcription factors as relevant elements for alkaline-pH tolerance.

Indexed as

Gene Expression Regulation, FungalHomeostasisAdenosine TriphosphatasesAlkaliesCation Transport ProteinsGATA Transcription FactorsHydrogen-Ion ConcentrationIonsMutationNitrogenRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSaccharomycetalesSodium-Potassium-Exchanging ATPaseTranscriptional ActivationAdenosine TriphosphatasesAlkaliesCation Transport ProteinsENA1 protein, S cerevisiaeGAT1 protein, S cerevisiaeGATA Transcription FactorsGLN3 protein, S cerevisiaeGZF3 protein, S cerevisiaeIonsNitrogenRepressor ProteinsSaccharomyces cerevisiae ProteinsSodium-Potassium-Exchanging ATPaseTranscription Factors

Identifiers

PMID16896222
PMCPMC1539131
OpenAlexW2155867242

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.