Evidence map›Paper›PMID 16894159›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

A codon deletion confers resistance to herbicides inhibiting protoporphyrinogen oxidase.

William L Patzoldt, Aaron G Hager, Joel S McCormick, Patrick J Tranel

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 208 citations in OpenAlex.

  1. Article
  2. Article
  3. PPO Inhibitors as a Key Focus in Herbicide Discovery.Molecules (Basel, Switzerland) · 2026
    Review
  4. Article
  5. Exploring the deletion landscape ofbioRxiv : the preprint server for biology · 2025
    Article
  6. Rapid Resistance Detection ofPlants (Basel, Switzerland) · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Do Traits Travel? Multiple-Herbicide-ResistantPlants (Basel, Switzerland) · 2023
    Article
  11. Article
  12. A New V361A Mutation inPlants (Basel, Switzerland) · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Field-EvolvedGenes · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

William L PatzoldtDepartment of Crop Sciences, University of Illinois, Urbana, IL 61801, USA.
Aaron G Hager
Joel S McCormick
Patrick J Tranel
University of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herbicides that act by inhibiting protoporphyrinogen oxidase (PPO) are widely used to control weeds in a variety of crops. The first weed to evolve resistance to PPO-inhibiting herbicides was Amaranthus tuberculatus, a problematic weed in the midwestern United States that previously had evolved multiple resistances to herbicides inhibiting two other target sites. Evaluation of a PPO-inhibitor-resistant A. tuberculatus biotype revealed that resistance was a (incompletely) dominant trait conferred by a single, nuclear gene. Three genes predicted to encode PPO were identified in A. tuberculatus. One gene from the resistant biotype, designated PPX2L, contained a codon deletion that was shown to confer resistance by complementation of a hemG mutant strain of Escherichia coli grown in the presence and absence of the PPO inhibitor lactofen. PPX2L is predicted to encode both plastid- and mitochondria-targeted PPO isoforms, allowing a mutation in a single gene to confer resistance to two herbicide target sites. Unique aspects of the resistance mechanism include an amino acid deletion, rather than a substitution, and the dual-targeting nature of the gene, which may explain why resistance to PPO inhibitors has been rare.

Indexed as

CodonAmaranthusBinding SitesGenetic Complementation TestHalogenated Diphenyl EthersHerbicidesModels, MolecularMolecular Sequence DataPhenyl EthersProtoporphyrinogen OxidaseCodonHalogenated Diphenyl EthersHerbicideslactofenPhenyl EthersProtoporphyrinogen Oxidase

Identifiers

PMID16894159
PMCPMC1567880
OpenAlexW1991322659

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.