Evidence map›Paper›PMID 16893464›Full record

ArticleDiagnostic pathology2006

Epstein-Barr virus (EBV) detection and typing by PCR: a contribution to diagnostic screening of EBV-positive Burkitt's lymphoma.

Rocío Hassan, Lídia Roxana White, Claudio Gustavo Stefanoff, Deilson Elgui de Oliveira, Fabricio E Felisbino, Claudete Esteves Klumb, Carlos E Bacchi, Héctor N Seuánez, Ilana R Zalcberg

Open access · goldAbstract read
In one paragraph

Article in Diagnostic pathology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 2 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 2 syntheses or guidelines pooled it, 70 citations in OpenAlex.

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  12. Molecular Pathology of Gastric Cancer.Journal of gastric cancer · 2022
    Review
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  20. Detection of EBV DNA in Non-Hodgkin Lymphoma Patients in Bulgaria.Indian journal of hematology & blood transfusion : an official journal of Indian Society of Hematology and Blood Transfusion · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Rocío HassanBone Marrow Transplantation Center (CEMO), Instituto Nacional de Câncer, Praça Cruz Vermelha 23, 20230-130, 6th floor, Rio de Janeiro, RJ, Brazil. biomol@inca.gov.br
Lídia Roxana White
Claudio Gustavo Stefanoff
Deilson Elgui de Oliveira
Fabricio E Felisbino
Claudete Esteves Klumb
Carlos E Bacchi
Héctor N Seuánez
Ilana R Zalcberg
Instituto Nacional do Câncer · BRUniversidade Estadual Paulista (Unesp) · BR

Funding

ANTIVIRAL MEDIATED APOPTOSIS OF NON HODGKIN'S LYMPHOMAR01CA082274 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI HARRINGTON, WILLIAM J · 2000 to 2007
$2.4M
NCI NIH HHS R01 CA082274
6 · The paper itself

Abstract

backgroundEpstein-Barr virus (EBV) is associated to the etio-pathogenesis of an increasing number of tumors. Detection of EBV in pathology samples is relevant since its high prevalence in some cancers makes the virus a promising target of specific therapies. RNA in situ hybridization (RISH) is the standard diagnostic procedure, while polymerase chain reaction (PCR)-based methods are used for strain (EBV type-1 or 2) distinction. We performed a systematic comparison between RISH and PCR for EBV detection, in a group of childhood B-cell Non-Hodgkin lymphomas (NHL), aiming to validate PCR as a first, rapid method for the diagnosis of EBV-associated B-cell NHL.

methodsEBV infection was investigated in formalin fixed paraffin-embedded tumor samples of 41 children with B-cell NHL, including 35 Burkitt's lymphoma (BL), from Rio de Janeiro, Brazil, by in situ hybridization of EBV-encoded small RNA (EBER-RISH) and PCR assays based on EBNA2 amplification.

resultsEBV genomes were detected in 68% of all NHL. Type 1 and 2 accounted for 80% and 20% of EBV infection, respectively. PCR and RISH were highly concordant (95%), as well as single- and nested-PCR results, allowing the use of a single PCR round for diagnostic purposes. PCR assays showed a sensitivity and specificity of 96% and 100%, respectively, with a detection level of 1 EBV genome in 5,000-10,000 EBV-negative cells, excluding the possibility of detecting low-number EBV-bearing memory cells.

conclusionWe describe adequate PCR conditions with similar sensitivity and reliability to RISH, to be used for EBV diagnostic screening in high grade B-NHL, in "at risk" geographic regions.

Identifiers

PMID16893464
PMCPMC1559641
OpenAlexW2111052066

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.