Evidence map›Paper›PMID 16893456›Full record

ArticleBMC cell biology2006

TBLR1 regulates the expression of nuclear hormone receptor co-repressors.

Xin-Min Zhang, Qing Chang, Lin Zeng, Judy Gu, Stuart Brown, Ross S Basch

Open access · goldAbstract read
In one paragraph

Article in BMC cell biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 49 citations in OpenAlex.

  1. A Phase II Study Assessing Long-term Response to Ibrutinib Monotherapy in Recurrent or Refractory CNS Lymphoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Trial
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  5. Article
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  7. Review
  8. Rare variant of TBL1XR1 in West syndrome: A case report.Molecular genetics & genomic medicine · 2022
    Review
  9. Case report: A rare case ofFrontiers in oncology · 2022
    Article
  10. Article
  11. Review
  12. Article
  13. BQ323636.1, a Novel Splice Variant toClinical cancer research : an official journal of the American Association for Cancer Research · 2018
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xin-Min ZhangDepartment of Pathology, New York University School of Medicine, New York, NY 10016, USA. zhangX01@popmail.med.nyu.ed
Qing Chang
Lin Zeng
Judy Gu
Stuart Brown
Ross S Basch
New York University · US

Funding

C21, a Transcriptional Regulator in HematopoiesisR01HL073713 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BASCH, ROSS S · 2002 to 2005
$1.5M
HEMATOPOIETIC PRECURSORSR01DK043376 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BASCH, ROSS S · 1994 to 1996
–
NHLBI NIH HHS HL73713NHLBI NIH HHS R01 HL073713NIDDK NIH HHS DK43376
6 · The paper itself

Abstract

backgroundTranscription is regulated by a complex interaction of activators and repressors. The effectors of repression are large multimeric complexes which contain both the repressor proteins that bind to transcription factors and a number of co-repressors that actually mediate transcriptional silencing either by inhibiting the basal transcription machinery or by recruiting chromatin-modifying enzymes.

resultsTBLR1 [GenBank: NM024665] is a co-repressor of nuclear hormone transcription factors. A single highly conserved gene encodes a small family of protein molecules. Different isoforms are produced by differential exon utilization. Although the ORF of the predominant form contains only 1545 bp, the human gene occupies approximately 200 kb of genomic DNA on chromosome 3q and contains 16 exons. The genomic sequence overlaps with the putative DC42 [GenBank: NM030921] locus. The murine homologue is structurally similar and is also located on Chromosome 3. TBLR1 is closely related (79% homology at the mRNA level) to TBL1X and TBL1Y, which are located on Chromosomes X and Y. The expression of TBLR1 overlaps but is distinct from that of TBL1. An alternatively spliced form of TBLR1 has been demonstrated in human material and it too has an unique pattern of expression. TBLR1 and the homologous genes interact with proteins that regulate the nuclear hormone receptor family of transcription factors. In resting cells TBLR1 is primarily cytoplasmic but after perturbation the protein translocates to the nucleus. TBLR1 co-precipitates with SMRT, a co-repressor of nuclear hormone receptors, and co-precipitates in complexes immunoprecipitated by antiserum to HDAC3. Cells engineered to over express either TBLR1 or N- and C-terminal deletion variants, have elevated levels of endogenous N-CoR. Co-transfection of TBLR1 and SMRT results in increased expression of SMRT. This co-repressor undergoes ubiquitin-mediated degradation and we suggest that the stabilization of the co-repressors by TBLR1 occurs because of a novel mechanism that protects them from degradation. Transient over expression of TBLR1 produces growth arrest.

conclusionTBLR1 is a multifunctional co-repressor of transcription. The structure of this family of molecules is highly conserved and closely related co-repressors have been found in all eukaryotic organisms. Regulation of co-repressor expression and the consequent alterations in transcriptional silencing play an important role in the regulation of differentiation.

Indexed as

Amino Acid SequenceAnimalsCell LineCell NucleusCell ProliferationChlorocebus aethiopsChromosomes, Human, 1-3Conserved SequenceDNA-Binding ProteinsGene Expression RegulationGenome, HumanHumansMiceMolecular Sequence DataNuclear ProteinsNuclear Receptor Co-Repressor 2DNA-Binding ProteinsNCOR2 protein, humanNcor2 protein, mouseNuclear ProteinsNuclear Receptor Co-Repressor 2Proteasome Endopeptidase ComplexProteasome InhibitorsReceptors, Cytoplasmic and NuclearReceptors, SteroidRepressor ProteinsTBL1XR1 protein, human

Identifiers

PMID16893456
PMCPMC1555579
OpenAlexW1827185920

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.