Evidence map›Paper›PMID 16891502›Full record

ArticleJournal of clinical microbiology2006

Rapid detection of the Mycobacterium tuberculosis Beijing genotype and its ancient and modern sublineages by IS6110-based inverse PCR.

Igor Mokrousov, Wei Wei Jiao, Violeta Valcheva, Anna Vyazovaya, Tatiana Otten, Ho Minh Ly, Nguyen Ngoc Lan, Elena Limeschenko, Nadya Markova, Boris Vyshnevskiy and 2 more

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

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  11. Using a multiplex polymerase chain reaction for the identification of Beijing strains of Mycobacterium tuberculosis.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2009
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 4 countries.

Igor MokrousovLaboratory of Molecular Microbiology, St. Petersburg Pasteur Institute, 197101 St. Petersburg, Russia. igormokrousov@yahoo.com
Wei Wei Jiao
Violeta Valcheva
Anna Vyazovaya
Tatiana Otten
Ho Minh Ly
Nguyen Ngoc Lan
Elena Limeschenko
Nadya Markova
Boris Vyshnevskiy
A Dong Shen
Olga Narvskaya
Saint Petersburg Pasteur Institute · RUBeijing Children’s Hospital · CNSaint-Petersburg Research Institute of Phthisiopulmonology · RUBulgarian Academy of Sciences · BGNational Institute Of Hygiene And Epidemiology · VNPham Ngoc Thach Hospital · VNStephan Angeloff Institute of Microbiology · BG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Mycobacterium tuberculosis Beijing genotype strains appear to be hypervirulent and associated with multidrug-resistant tuberculosis. Therefore, the development of a both rapid and simple method to detect the M. tuberculosis Beijing genotype is of clinical interest per se. Previously, we described a simple and fast approach to detect the Beijing genotype based on IS6110 inverse-PCR typing. Here, we evaluated this method against a large, diverse, and recent collection of strains. The study sample included 866 M. tuberculosis strains representing but not limited to the regions in Russia, Europe, and East Asia where the Beijing genotype is endemic. Based on a spoligotyping method, 408 strains were identified as Beijing genotypes; they were additionally subdivided into ancient and modern sublineages based on the analysis of the NTF locus. All strains were further subjected to the IS6110-based inverse PCR. All of the Beijing genotype strains were found to have identical two-band (ancient sublineage) or three-band (modern sublineage) profiles that were easily recognizable and distinct from the profiles of the non-Beijing strains. Therefore, we suggest using IS6110-based inverse-PCR typing for the correct identification of the Beijing genotype and its major sublineages. The method is fast and inexpensive and does not require additional experiments but instead is implemented in the routine typing method of M. tuberculosis.

Indexed as

Bacterial Typing TechniquesDNA, BacterialDNA FingerprintingDNA Transposable ElementsEndemic DiseasesGenotypeHumansMycobacterium tuberculosisPolymerase Chain ReactionTuberculosisDNA, BacterialDNA Transposable Elements

Identifiers

PMID16891502
PMCPMC1594662
OpenAlexW2090668765

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.