ArticleGenome biology2006
Zebrafish promoter microarrays identify actively transcribed embryonic genes.
Article in Genome biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
46 citing papers in PubMed.
- Epigenetic Regulation of Endothelial Cell Lineages During Zebrafish Development-New Insights From Technical Advances.Frontiers in cell and developmental biology · 2022Review
- Tpr Deficiency Disrupts Erythroid Maturation With Impaired Chromatin Condensation in Zebrafish Embryogenesis.Frontiers in cell and developmental biology · 2021Article
- FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation.BMC biology · 2019Article
- Cul4a promotes zebrafish primitive erythropoiesis via upregulating scl and gata1 expression.Cell death & disease · 2019Article
- Chromatin accessibility is associated with CRISPR-Cas9 efficiency in the zebrafish (Danio rerio).PloS one · 2018Article
- Zebrafish as an In Vivo Model to Assess Epigenetic Effects of Ionizing Radiation.International journal of molecular sciences · 2016Review
- DANIO-CODE: Toward an Encyclopedia of DNA Elements in Zebrafish.Zebrafish · 2016Article
- Developmentally arrested Austrofundulus limnaeus embryos have changes in post-translational modifications of histone H3.The Journal of experimental biology · 2016Article
- Tbx6, Mesp-b and Ripply1 regulate the onset of skeletal myogenesis in zebrafish.Development (Cambridge, England) · 2015Article
- Evolutionary history and epigenetic regulation of the three paralogous pax7 genes in rainbow trout.Cell and tissue research · 2015Article
- UXT potentiates angiogenesis by attenuating Notch signaling.Development (Cambridge, England) · 2015Article
- Cross-species oncogenomics using zebrafish models of cancer.Current opinion in genetics & development · 2015Review
- Fgf-signaling-dependent Sox9a and Atoh1a regulate otic neural development in zebrafish.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2015Article
- Article
- Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis.Genome research · 2013Article
- Bcl6a function is required during optic cup formation to prevent p53-dependent apoptosis and colobomata.Human molecular genetics · 2013Article
- Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing.Epigenetics · 2013Article
- Prdm1a directly activates foxd3 and tfap2a during zebrafish neural crest specification.Development (Cambridge, England) · 2013Article
- DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus.Genome biology · 2013Article
- Cannabinoid receptor 2 suppresses leukocyte inflammatory migration by modulating the JNK/c-Jun/Alox5 pathway.The Journal of biological chemistry · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors.
Funding
Abstract
We have designed a zebrafish genomic microarray to identify DNA-protein interactions in the proximal promoter regions of over 11,000 zebrafish genes. Using these microarrays, together with chromatin immunoprecipitation with an antibody directed against tri-methylated lysine 4 of Histone H3, we demonstrate the feasibility of this method in zebrafish. This approach will allow investigators to determine the genomic binding locations of DNA interacting proteins during development and expedite the assembly of the genetic networks that regulate embryogenesis.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.