Evidence map›Paper›PMID 16888624›Full record

ArticleThe EMBO journal2006

TOR regulates late steps of ribosome maturation in the nucleoplasm via Nog1 in response to nutrients.

Yoshimi Honma, Aiko Kitamura, Ryo Shioda, Hironori Maruyama, Kanako Ozaki, Yoko Oda, Thierry Mini, Paul Jenö, Yasushi Maki, Kazuyoshi Yonezawa and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 62 citations in OpenAlex.

  1. Global transcriptomic response ofFrontiers in veterinary science · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. International journal of molecular sciences · 2021
    Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Yoshimi HonmaFaculty of Science, Shizuoka University, Shizuoka, Japan.
Aiko Kitamura
Ryo Shioda
Hironori Maruyama
Kanako Ozaki
Yoko Oda
Thierry Mini
Paul Jenö
Yasushi Maki
Kazuyoshi Yonezawa
Ed Hurt
Masaru Ueno
Masahiro Uritani
Michael N Hall
Takashi Ushimaru
Shizuoka University · JPUniversity of Basel · CHKobe University · JPNiigata University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The protein kinase TOR (target of rapamycin) controls several steps of ribosome biogenesis, including gene expression of rRNA and ribosomal proteins, and processing of the 35S rRNA precursor, in the budding yeast Saccharomyces cerevisiae. Here we show that TOR also regulates late stages of ribosome maturation in the nucleoplasm via the nuclear GTP-binding protein Nog1. Nog1 formed a complex that included 60S ribosomal proteins and pre-ribosomal proteins Nop7 and Rlp24. The Nog1 complex shuttled between the nucleolus and the nucleoplasm for ribosome biogenesis, but it was tethered to the nucleolus by both nutrient depletion and TOR inactivation, causing cessation of the late stages of ribosome biogenesis. Furthermore, after this, Nog1 and Nop7 proteins were lost, leading to complete cessation of ribosome maturation. Thus, the Nog1 complex is a critical regulator of ribosome biogenesis mediated by TOR. This is the first description of a physiological regulation of nucleolus-to-nucleoplasm translocation of pre-ribosome complexes.

Indexed as

Biological Transport, ActiveCell NucleolusCell NucleusCulture MediaGTP-Binding ProteinsNuclear ProteinsProtein BindingProtein Serine-Threonine KinasesRibosomal ProteinsRibosomesRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSirolimusCulture MediaGTP-Binding ProteinsNOG1 protein, S cerevisiaeNOP7 protein, S cerevisiaeNuclear ProteinsProtein Serine-Threonine KinasesRibosomal ProteinsRlp24 protein, S cerevisiaeRLP7 protein, S cerevisiaeRNA, RibosomalSaccharomyces cerevisiae ProteinsSirolimustarget of rapamycin protein, S cerevisiae

Identifiers

PMID16888624
PMCPMC1553199
OpenAlexW2104906167

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.