Evidence map›Paper›PMID 16888622›Full record

ArticleThe EMBO journal2006

SAGA binds TBP via its Spt8 subunit in competition with DNA: implications for TBP recruitment.

Decha Sermwittayawong, Song Tan

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 89 citations in OpenAlex.

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  12. Chronicles of the human SAGA co-activator complex.Nature structural & molecular biology · 2021
    Article
  13. Structure of the human SAGA coactivator complex.Nature structural & molecular biology · 2021
    Article
  14. Article
  15. What do Transcription Factors Interact With?Journal of molecular biology · 2021
    Review
  16. The SAGA continues: The rise of cis- and trans-histone crosstalk pathways.Biochimica et biophysica acta. Gene regulatory mechanisms · 2021
    Review
  17. The biochemical and genetic discovery of the SAGA complex.Biochimica et biophysica acta. Gene regulatory mechanisms · 2021
    Review
  18. Review
  19. Article
  20. Nucleosomal proofreading of activator-promoter interactions.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Decha SermwittayawongCenter for Gene Regulation, Department of Biochemistry & Molecular Biology, The Pennsylvania State University, University Park, PA, USA.
Song Tan
Pennsylvania State University · US

Funding

STRUCTURE AND FUNCTION OF GENE REGULATORY COMPLEXESR01GM060489 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI TAN, SONG · 2000 to 2010
$2.4M
NIGMS NIH HHS GM064089NIGMS NIH HHS R01 GM060489
6 · The paper itself

Abstract

In yeast, the multisubunit SAGA (Spt-Ada-Gcn5-acetyltransferase) complex acts as a coactivator to recruit the TATA-binding protein (TBP) to the TATA box, a critical step in eukaryotic gene regulation. However, it is unclear which SAGA subunits are responsible for SAGA's direct interactions with TBP and precisely how SAGA recruits TBP to the promoter. We have used chemical crosslinking to identify Spt8 and Ada1 as potential SAGA subunits that interact with TBP, and we find that both Spt8 and SAGA bind directly to TBP monomer in competition with TBP dimer. We further find that Spt8 and SAGA compete with DNA to bind TBP rather than forming a triple complex. Our results suggest a handoff model for SAGA recruitment of TBP: instead of binding together with TBP at the TATA box, activator-recruited SAGA transfers TBP to the TATA box. This simple model can explain SAGA's observed ability to both activate and repress transcription.

Indexed as

Models, BiologicalTATA BoxAdaptor Proteins, Signal TransducingDNAPromoter Regions, GeneticProtein SubunitsSaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTrans-ActivatorsTranscriptional ActivationTranscription FactorsAdaptor Proteins, Signal TransducingDNAHFI1 protein, S cerevisiaeProtein SubunitsSaccharomyces cerevisiae ProteinsSPT8 protein, S cerevisiaeTATA-Box Binding ProteinTrans-ActivatorsTranscription Factors

Identifiers

PMID16888622
PMCPMC1553190
OpenAlexW2172130748

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.